View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_high_21 (Length: 368)

Name: NF2767_high_21
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_high_21
NF2767_high_21
[»] chr6 (15 HSPs)
chr6 (62-368)||(2658317-2658623)
chr6 (62-364)||(2935043-2935330)
chr6 (62-364)||(2964953-2965260)
chr6 (62-368)||(2996723-2997011)
chr6 (62-220)||(2938036-2938188)
chr6 (104-221)||(2983441-2983558)
chr6 (62-219)||(2974584-2974735)
chr6 (104-220)||(2929885-2930001)
chr6 (104-220)||(2927736-2927852)
chr6 (122-221)||(2952511-2952610)
chr6 (122-220)||(3003188-3003286)
chr6 (247-360)||(2929757-2929870)
chr6 (247-368)||(2974447-2974568)
chr6 (320-368)||(2937900-2937948)
chr6 (272-368)||(2927600-2927696)
[»] chr7 (1 HSPs)
chr7 (105-368)||(3339465-3339716)
[»] scaffold0024 (1 HSPs)
scaffold0024 (62-368)||(34592-34880)
[»] chr3 (2 HSPs)
chr3 (105-220)||(49618987-49619102)
chr3 (103-220)||(49614012-49614129)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 62 - 368
Target Start/End: Original strand, 2658317 - 2658623
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaag 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2658317 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagtagtaag 2658416  T
Q  162 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctac 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658417 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctac 2658516  T
Q  262 aaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaagttagccacagaatc 361  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  2658517 aaaaatcttttaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaaacaagttagccacagaatc 2658616  T
Q  362 actgtct 368  Q
    |||||||    
T  2658617 actgtct 2658623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 62 - 364
Target Start/End: Complemental strand, 2935330 - 2935043
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaag 161  Q
    ||||||||  |||||||||||||||||||||||| | |   ||||||| ||||| || ||||||||||||| ||||| || |||||||| ||||||||||    
T  2935330 ttatgaactcaacaatgaaagaaatcactaggaggctt---gttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaag 2935234  T
Q  162 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctac 261  Q
    |||||||||| ||||||| ||| || |||||||||  |||||||||||||||| |||||  |            ||| |||||| ||||||||||| |||    
T  2935233 attccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagc------------cttcaacttatgccaaggattcttac 2935146  T
Q  262 aaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaagttagccacagaatc 361  Q
    ||||| | | ||||||||  || ||||||| |||||||| |||| ||||| | || ||||||||||| ||||||||| |||  |||||||||||||||||    
T  2935145 aaaaagcatttaagtctttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccacagaatc 2935046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 62 - 364
Target Start/End: Complemental strand, 2965260 - 2964953
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgt---actacttgaaatacagaacaaactgtttgaattatagtgagaataagtagt 158  Q
    ||||||||  |||||||||||||||||||||||  |||||||||||   |||||||| ||    ||||||||||||||||||| |||||||| |||||||    
T  2965260 ttatgaactcaacaatgaaagaaatcactaggaagcattaggttgttgtactacttgcaa----gaacaaactgtttgaattaaagtgagaacaagtagt 2965165  T
Q  159 aagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtg----ccaa--tcaatgagtacttaaacttaggccaag 252  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||     |||  |||| |   || | ||||   ||||||    
T  2965164 aagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtggacttcaacttcaacgtcaacattaactggcgccaag 2965065  T
Q  253 gattcctacaaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaagttagc 352  Q
    |||||| ||||||| | |  || ||||  |||||||||| ||| ||| ||||| ||||| ||||  |||||| |||| |||||||| |||  ||||||||    
T  2965064 gattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacatatttggaaagaccattaaacaagttagc 2964965  T
Q  353 cacagaatcact 364  Q
    ||||||||||||    
T  2964964 cacagaatcact 2964953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 368
Target Start/End: Original strand, 2996723 - 2997011
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaag 161  Q
    ||||||||  |||||||||||||||||||||||| |      |||||| ||||| || ||||||||||||| |||||| | |||||||| ||||||||      
T  2996723 ttatgaactcaacaatgaaagaaatcactaggaggc------ttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtaca 2996816  T
Q  162 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctac 261  Q
    |||||||||||||||||| |||||| |||||||||  ||| |||||||||||| |||||  |            ||| |||||| |||||||||||||||    
T  2996817 attccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagc------------cttcaacttatgccaaggattcctac 2996904  T
Q  262 aaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaagttagccacagaatc 361  Q
    ||||| | | |||||| |  |||||||||| ||| |||| |||| ||||   |||   ||||||| ||||||||||| |||  |||||||||||||||||    
T  2996905 aaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatc 2997004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 2938188 - 2938036
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaag 161  Q
    ||||||||  |||||||||||||||||||||||| |      |||||| ||||| || ||||||||||||| ||||| || |||||||||||||||||||    
T  2938188 ttatgaactcaacaatgaaagaaatcactaggaggc------ttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagtaag 2938095  T
Q  162 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagt 220  Q
    |||||||||| ||||||| ||| || |||||||||  ||| ||||||||||||||||||    
T  2938094 attccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagt 2938036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 2983558 - 2983441
Alignment:
Q  104 ttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaa 203  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||  ||||||||||||| ||| |    
T  2983558 ttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagtagtaagactccagcaacggaagcagcaattttccaaggagtattgcca 2983459  T
Q  204 taatcacgcctcagagtg 221  Q
    ||||||||||| ||||||    
T  2983458 taatcacgcctgagagtg 2983441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 2974735 - 2974584
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaag 161  Q
    ||||||||  |||||||||||||||||||||||  |      |||||||||||| || |||||||||||| |||||||||||||||||| |||||| ||     
T  2974735 ttatgaactcaacaatgaaagaaatcactaggatgc------ttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaa 2974642  T
Q  162 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagag 219  Q
    |||||||||| ||||||| |||  | |||||||||| |||||||||||||||| ||||    
T  2974641 attccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 2974584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 2930001 - 2929885
Alignment:
Q  104 ttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaa 203  Q
    |||||| ||||| || ||||||||||||| ||||| || |||||||| ||||||||||| |||||||| ||||||| ||| || |||||||||||| |||    
T  2930001 ttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaa 2929902  T
Q  204 taatcacgcctcagagt 220  Q
    ||||||||||| |||||    
T  2929901 taatcacgcctgagagt 2929885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 2927852 - 2927736
Alignment:
Q  104 ttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaa 203  Q
    |||||| ||||| || ||||||||||||| ||||| || |||||||| ||||||||||||||| |||| ||||||| ||| || |||||||||  |||||    
T  2927852 ttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagtttgccaaggagttttgcaa 2927753  T
Q  204 taatcacgcctcagagt 220  Q
    ||||||||||| |||||    
T  2927752 taatcacgcctgagagt 2927736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 2952610 - 2952511
Alignment:
Q  122 agaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtg 221  Q
    ||||||||||||||||| || |||||||  ||| |||| ||||||||||| ||||||| ||| || |||||||||  ||| |||||||||||||||||||    
T  2952610 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg 2952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 3003188 - 3003286
Alignment:
Q  122 agaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagt 220  Q
    ||||||||||||||||| || |||||||  ||| |||||||||||||||| ||||||| ||| || ||| |||||  |||||||||||||||| |||||    
T  3003188 agaacaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaataatcacgcctgagagt 3003286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 2929870 - 2929757
Alignment:
Q  247 gccaaggattcctacaaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaa 346  Q
    |||||||||||  ||||||| | | ||||||||  || ||||||| ||||||||||||| ||||| ||||  ||| || |||||||| |||| |||  |     
T  2929870 gccaaggattctaacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacat 2929771  T
Q  347 gttagccacagaat 360  Q
    ||||||||||||||    
T  2929770 gttagccacagaat 2929757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 368
Target Start/End: Complemental strand, 2974568 - 2974447
Alignment:
Q  247 gccaaggattcctacaaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaa 346  Q
    ||||||||||||||||| || | |  || ||||  |||||||||| |||||||| |||| ||||| |||  |||| |||||  | ||||||| ||| |||    
T  2974568 gccaaggattcctacaataagcattcaattctttgcaaagaatagagaaatgagaactgatattagaatttgtaatattttctccaagaccattaaataa 2974469  T
Q  347 gttagccacagaatcactgtct 368  Q
    | |||| |||||||||||||||    
T  2974468 gatagcaacagaatcactgtct 2974447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 2937948 - 2937900
Alignment:
Q  320 aacatttttgcaaagaccagtaattaagttagccacagaatcactgtct 368  Q
    ||||||||||||||||||| |||  || |||||||||||||||||||||    
T  2937948 aacatttttgcaaagaccattaaacaaattagccacagaatcactgtct 2937900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 368
Target Start/End: Complemental strand, 2927696 - 2927600
Alignment:
Q  272 taagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaagttagccacagaatcactgtct 368  Q
    ||||||||  |||||||||| ||| |||| |||| |  || || | ||||||||||| | ||||||| |||  ||||||||||||||||||| ||||    
T  2927696 taagtctttgcaaagaatagagaattgagaactgattgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatcaccgtct 2927600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 3339716 - 3339465
Alignment:
Q  105 tgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaat 204  Q
    ||||||||||| || ||||||||||||| ||||| || |||||||| ||||||||  |||||||||| ||||||| ||| || |||||||||| ||||||    
T  3339716 tgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaat 3339617  T
Q  205 aatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctacaaaaatcttgtaagtcttcacaaagaatagtgaaatgaggact 304  Q
    |||||||||| |||||| |            ||| ||| || ||||||||||| |||||||||| | ||||||||  | |||| ||| |||||||| |||    
T  3339616 aatcacgcctgagagtggc------------cttcaacctatgccaaggattcttacaaaaatcatttaagtctttgccaagagtagggaaatgagaact 3339529  T
Q  305 gctattacaatgagtaacatttttgcaaagaccagtaattaagttagccacagaatcactgtct 368  Q
       | || ||||  |||||||||||||||||||| |||  || |||||||||||||||||||||    
T  3339528 tacactagaatgcataacatttttgcaaagaccattaaacaatttagccacagaatcactgtct 3339465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 368
Target Start/End: Original strand, 34592 - 34880
Alignment:
Q  62 ttatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaag 161  Q
    ||||||||  |||||||||||||||||||||||| |      |||||||||||| || ||||||||||||| |||||  | |||||||| |||||||||     
T  34592 ttatgaactcaacaatgaaagaaatcactaggaggc------ttgtactacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaa 34685  T
Q  162 attccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggattcctac 261  Q
    |||||||||| ||||||| ||| || |||||||||  ||| |||||||||||| ||||    || |        ||| ||| ||  ||||||||| ||||    
T  34686 attccagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagag----aagc--------cttcaacctattccaaggattactac 34773  T
Q  262 aaaaatcttgtaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaattaagttagccacagaatc 361  Q
    ||||  | | ||||| ||  |||||||||| |||||||| |||| |||||  |||  |||||||||||||||||| | |||  |||||||||||||||||    
T  34774 aaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacagaatc 34873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 49619102 - 49618987
Alignment:
Q  105 tgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaat 204  Q
    ||||| ||||| || | ||||||||||| ||||| || || ||||| ||||||||| |||||||||| ||||||| ||| || |||||||||||||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  205 aatcacgcctcagagt 220  Q
    |||||||||| |||||    
T  49619002 aatcacgcctgagagt 49618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 49614129 - 49614012
Alignment:
Q  103 gttgtactacttgaaatacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgca 202  Q
    ||||||| ||||| || || | |||||||| ||||| || || ||||||||||||||| |||||||||| ||||||| ||| || ||||||| |  ||||    
T  49614129 gttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgca 49614030  T
Q  203 ataatcacgcctcagagt 220  Q
    ||||||||| || |||||    
T  49614029 ataatcacgtctgagagt 49614012  T

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