View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_26 (Length: 308)
Name: NF2767_high_26
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 36767262 - 36766983
Alignment:
| Q |
11 |
gaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaa |
110 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36767262 |
gaagaagaaaggtcattcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaa |
36767163 |
T |
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| Q |
111 |
atgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccac |
210 |
Q |
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| T |
36767162 |
atgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccac |
36767063 |
T |
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| Q |
211 |
atatcatccatgcccacacctccagaagaactaggcagattccttctagaatattgcacaggaggcgcagttgatgaact |
290 |
Q |
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| T |
36767062 |
atatcatccatgcccacacctccagaagaactaggcagattccttctagaatattgcacaggaggtgcagttgatgaact |
36766983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 36748662 - 36748538
Alignment:
| Q |
169 |
tcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccagaagaactaggcagattccttctagaatattgca |
268 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
36748662 |
tcatcacctctcccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccaaaagaactagacagactccttctagaatattgca |
36748563 |
T |
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| Q |
269 |
caggaggcgcagttgatgaacttga |
293 |
Q |
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| T |
36748562 |
aaggaggcgcagttgatgtacttga |
36748538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 36748766 - 36748659
Alignment:
| Q |
41 |
ccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctccaagtggaaa |
140 |
Q |
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|||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||| || ||| |||||||||||||||||| |||||||||| |
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| T |
36748766 |
ccagactggtttggagtgccgtttcaaatcccaattccttaactttttcatgatacttctccataccgaagtgcttgtcaataaggtctgcaagtggaaa |
36748667 |
T |
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| Q |
141 |
attgtcat |
148 |
Q |
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|| ||||| |
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| T |
36748666 |
atcgtcat |
36748659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 36771860 - 36771625
Alignment:
| Q |
11 |
gaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaa |
110 |
Q |
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||||||| || |||| |||||||||||| | ||| | ||||| |||||| ||| |||| || |||||| |||||||||||| | ||||| || ||| |
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| T |
36771860 |
gaagaagcaacgtcgtgcgaatgcaatccgctaggtttgtttgtagtgccctttgtaatctcagctccttagctttttcatgatgcatttccttaccgaa |
36771761 |
T |
|
| Q |
111 |
atgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccac |
210 |
Q |
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| T |
36771760 |
atgcttatcaataaggtctccaagtggaaaaccgacatcccagattaatgcgtcatcatcatcaccactaccatttatctcggtaaaaagtgatgtccac |
36771661 |
T |
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| Q |
211 |
atatcatccatgcccacacctccagaagaactaggc |
246 |
Q |
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| T |
36771660 |
atttcatacacatctacacctttagaagaactaggc |
36771625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 36756131 - 36756042
Alignment:
| Q |
14 |
gaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttcca |
103 |
Q |
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|||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |||| |
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| T |
36756131 |
gaagaaagttcgtacgaatgcaatccaccaggctggtttggagtgccgtttcaaatcccaattccttaactttttcatgattcttctcca |
36756042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 21138358 - 21138147
Alignment:
| Q |
9 |
atgaagaagaaaggtcgatcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactg |
108 |
Q |
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||||||||| ||||| | ||||| | |||| |||||| ||||||||| | |||||||| |||||||||| |||||||||||| |||||||| |||| |
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| T |
21138358 |
atgaagaaggaaggttgttcgaacggaatctgtcaggctagtttggagtactctttcaaattccaactccttaactttttcatgaaacttttcctgactg |
21138259 |
T |
|
| Q |
109 |
aaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtcc |
208 |
Q |
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|||||||| | |||| | |||| | |||||||| |||| ||||| | | | | |||| |||||||||| | | |||||||||| |||||||| |||| |
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| T |
21138258 |
aaatgcttattgataaagcctccgaaaggaaaattatcatcccagactgatgtggtatcaccatcaccactactattgatctcagtgaaaaatgacgtcc |
21138159 |
T |
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| Q |
209 |
acatatcatcca |
220 |
Q |
| |
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|||| ||||||| |
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| T |
21138158 |
acatttcatcca |
21138147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 36756038 - 36755965
Alignment:
| Q |
150 |
ccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgc |
223 |
Q |
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| T |
36756038 |
ccagattaatggggcatcaccatcaccgctaccaccgatctcagtaaaatatgatgtccacatatcatcgatgc |
36755965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 23462775 - 23462824
Alignment:
| Q |
107 |
tgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagatt |
156 |
Q |
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|||||||||| |||| || |||||||| |||||||||||||| ||||||| |
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| T |
23462775 |
tgaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagatt |
23462824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 23433088 - 23433176
Alignment:
| Q |
43 |
aggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctcc |
131 |
Q |
| |
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||||| ||||||||| | |||| ||| ||| |||||| ||||||||| | |||||||| |||||| ||||| |||||||||||||| |
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| T |
23433088 |
aggctagtttggagtactctttctaattccatctccttaactttttcaaaaaacttttccttactgaattgcttatcaataaggtctcc |
23433176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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