View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_high_30 (Length: 300)

Name: NF2767_high_30
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_high_30
NF2767_high_30
[»] chr3 (17 HSPs)
chr3 (6-210)||(17003838-17004042)
chr3 (211-299)||(50934495-50934583)
chr3 (211-300)||(47426345-47426434)
chr3 (220-300)||(33509684-33509764)
chr3 (211-284)||(32319468-32319541)
chr3 (211-282)||(10179868-10179939)
chr3 (210-300)||(44380248-44380338)
chr3 (216-294)||(47186175-47186253)
chr3 (216-294)||(31187163-31187241)
chr3 (211-282)||(10018671-10018742)
chr3 (216-294)||(42664673-42664751)
chr3 (214-288)||(37742726-37742797)
chr3 (216-294)||(34029384-34029462)
chr3 (211-294)||(35094541-35094626)
chr3 (211-294)||(17466268-17466351)
chr3 (211-282)||(10123211-10123282)
chr3 (218-294)||(39498762-39498838)
[»] chr4 (17 HSPs)
chr4 (211-300)||(12473699-12473788)
chr4 (211-300)||(12528108-12528197)
chr4 (211-300)||(33249461-33249550)
chr4 (209-294)||(35869664-35869749)
chr4 (211-294)||(21260789-21260872)
chr4 (211-293)||(55590477-55590559)
chr4 (213-300)||(22343334-22343421)
chr4 (217-300)||(52910136-52910219)
chr4 (211-294)||(51811909-51811992)
chr4 (216-294)||(52012778-52012856)
chr4 (211-300)||(34829170-34829259)
chr4 (216-294)||(9799456-9799534)
chr4 (217-300)||(49999675-49999758)
chr4 (247-294)||(1796163-1796210)
chr4 (220-275)||(49998486-49998541)
chr4 (240-294)||(46719954-46720008)
chr4 (239-275)||(35781027-35781063)
[»] chr2 (7 HSPs)
chr2 (211-300)||(34392168-34392257)
chr2 (210-294)||(7381686-7381770)
chr2 (209-294)||(21603952-21604037)
chr2 (211-300)||(37358008-37358097)
chr2 (230-300)||(23863890-23863958)
chr2 (216-293)||(4775634-4775711)
chr2 (247-300)||(41095873-41095926)
[»] chr1 (11 HSPs)
chr1 (211-300)||(29119411-29119500)
chr1 (210-300)||(32676130-32676220)
chr1 (216-288)||(2569037-2569109)
chr1 (211-294)||(25161304-25161387)
chr1 (216-294)||(8809733-8809811)
chr1 (211-269)||(46435571-46435629)
chr1 (213-294)||(7214504-7214585)
chr1 (211-294)||(8462124-8462206)
chr1 (216-294)||(35998252-35998330)
chr1 (245-294)||(3688931-3688980)
chr1 (217-265)||(16679821-16679868)
[»] chr5 (13 HSPs)
chr5 (213-300)||(19357348-19357435)
chr5 (206-294)||(9827778-9827866)
chr5 (211-294)||(11607627-11607710)
chr5 (211-294)||(39570136-39570219)
chr5 (211-300)||(1826254-1826343)
chr5 (216-294)||(38010707-38010785)
chr5 (211-294)||(13015376-13015459)
chr5 (221-294)||(33858631-33858704)
chr5 (216-294)||(13086753-13086831)
chr5 (216-294)||(29989962-29990040)
chr5 (216-294)||(13478138-13478216)
chr5 (232-300)||(33271630-33271698)
chr5 (217-300)||(13421097-13421180)
[»] chr7 (8 HSPs)
chr7 (211-300)||(48250149-48250238)
chr7 (211-294)||(35341531-35341614)
chr7 (210-300)||(40893129-40893219)
chr7 (220-300)||(31306960-31307041)
chr7 (212-294)||(48072385-48072465)
chr7 (236-294)||(32694663-32694721)
chr7 (211-280)||(40856387-40856456)
chr7 (239-275)||(48072505-48072541)
[»] scaffold0032 (1 HSPs)
scaffold0032 (211-294)||(34189-34272)
[»] chr6 (6 HSPs)
chr6 (211-298)||(5403965-5404052)
chr6 (211-300)||(1211931-1212020)
chr6 (216-281)||(11753167-11753232)
chr6 (216-294)||(34245567-34245645)
chr6 (217-291)||(11113557-11113631)
chr6 (210-292)||(32644931-32645013)
[»] scaffold0229 (1 HSPs)
scaffold0229 (211-300)||(13093-13182)
[»] chr8 (8 HSPs)
chr8 (211-300)||(24337917-24338006)
chr8 (211-294)||(41179656-41179739)
chr8 (223-294)||(18168392-18168463)
chr8 (223-294)||(18631949-18632020)
chr8 (216-294)||(1514803-1514881)
chr8 (224-294)||(4708400-4708470)
chr8 (212-294)||(11254121-11254202)
chr8 (217-294)||(32825928-32826005)
[»] scaffold0263 (2 HSPs)
scaffold0263 (217-294)||(23192-23263)
scaffold0263 (217-265)||(23094-23142)
[»] scaffold0041 (1 HSPs)
scaffold0041 (210-300)||(73065-73155)
[»] scaffold0519 (1 HSPs)
scaffold0519 (212-294)||(11191-11272)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 17004042 - 17003838
Alignment:
Q  6 gaagtaaatggtgtgaagaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactatccaaaacc 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17004042 gaagaaaatggtgtgaagaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactattcaaaacc 17003943  T
Q  106 acaaattaaaagaataatactacctctatccatttttcttagtacatacccttaaggttaataactggggcgtccggtgttcaaaactcggaccctgcat 205  Q
    ||| ||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||||||||||| |||||| |||||||    
T  17003942 acatattaaaagaataatactacctctatccctttttattagtatatacctttaaggttaataagtggggtgtccggtgttcaaacctcggatcctgcat 17003843  T
Q  206 atatt 210  Q
    |||||    
T  17003842 atatt 17003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 50934495 - 50934583
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgc 299  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgc 50934583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 47426345 - 47426434
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgct 47426434  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 33509684 - 33509764
Alignment:
Q  220 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgct 33509764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 32319541 - 32319468
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatg 284  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 282  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 44380248 - 44380338
Alignment:
Q  210 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||| |||||| |||| |||||||||| |||||    
T  44380248 tggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgct 44380338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 47186175 - 47186253
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttata 47186253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 31187241 - 31187163
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||| |||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttata 31187163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 10018742 - 10018671
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 282  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||| |||| | |||||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 42664673 - 42664751
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| || | |||||| ||||| ||||| |||||||||||| ||||||||||| ||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttata 42664751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 37742726 - 37742797
Alignment:
Q  214 ttccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttac 288  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttac 37742797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 34029462 - 34029384
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||| |||||||||||||| |||| |||||| |||||  |||| |||||||||||| ||| ||||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttata 34029384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 35094541 - 35094626
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaatta--gagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||  |||||||||| |||| | ||||||||||||||| | |||||  |||| |||||||||||||||||||||||||    
T  35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttata 35094626  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 17466268 - 17466351
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||| |||||||| ||| |  ||  ||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||    
T  17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttata 17466351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 10123282 - 10123211
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 282  Q
    ||||||||||||||||||||||| |||  |||| |||||| || ||| |||| | |||||||||||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 39498838 - 39498762
Alignment:
Q  218 acttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||| |||| |||| ||||||  ||||| |||||| |||||| |||||| | |||||| ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttata 39498762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 12473699 - 12473788
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 12473788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 12528108 - 12528197
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 12528197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 33249550 - 33249461
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgct 33249461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 35869749 - 35869664
Alignment:
Q  209 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| ||||    
T  35869749 ttggtttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatata 35869664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 21260789 - 21260872
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttata 21260872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 55590477 - 55590559
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttat 293  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||  |||||| |||||| |||||||||||||||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 22343334 - 22343421
Alignment:
Q  213 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||| || ||| ||||||||||||||| |||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgct 22343421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 52910219 - 52910136
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgct 52910136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 51811909 - 51811992
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||| ||||||||||||||||  || | ||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttata 51811992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 52012778 - 52012856
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | |||||||||| ||||||||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttata 52012856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 34829259 - 34829170
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| ||||| ||||| |||||||||| |||| |||||| || |||||||||| |||||| |||||||||||||||||||||| |||||    
T  34829259 ggatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgct 34829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 9799534 - 9799456
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||  ||| |||||||| ||||||||||||||||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttata 9799456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 49999758 - 49999675
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||| ||| |||||||| ||| |  |||||| ||||||||||||| ||| ||||||||||| |||||| |||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgct 49999675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 1796163 - 1796210
Alignment:
Q  247 tataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgttactttata 1796210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  220 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 275  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 46719954 - 46720008
Alignment:
Q  240 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||| |||||| ||||| ||||| |||||||||||| ||| ||||||||||||||    
T  46719954 aatgttatataacattgaccaataagagtgtgccacatacaaatgttactttata 46720008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  239 taatggtatataccattggccaattagagtgtgccac 275  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 34392257 - 34392168
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgct 34392168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 7381686 - 7381770
Alignment:
Q  210 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  7381686 tggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttata 7381770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 21603952 - 21604037
Alignment:
Q  209 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  21603952 ttggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttata 21604037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 37358097 - 37358008
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||| |||||| ||||||||||||||| |||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgct 37358008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 23863958 - 23863890
Alignment:
Q  230 ttaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||||||| ||||||||||   ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgct 23863890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 4775634 - 4775711
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttat 293  Q
    |||||| |||||||||||| ||| |||| ||||||  |||||||||||||| |||  || |||||||| |||||||||    
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttat 4775711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 41095926 - 41095873
Alignment:
Q  247 tataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| ||||| |||||||||||  ||||||||||||||||||||||| |||||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgct 41095873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 29119500 - 29119411
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgct 29119411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 32676130 - 32676220
Alignment:
Q  210 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||    
T  32676130 tggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgct 32676220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 2569037 - 2569109
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttac 288  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttac 2569109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 25161304 - 25161387
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttata 25161387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 8809811 - 8809733
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttata 8809733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 46435629 - 46435571
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtg 269  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 7214585 - 7214504
Alignment:
Q  213 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||| |||||| | || ||||||||||    
T  7214585 attccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttata 7214504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 8462124 - 8462206
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||||  |||||| |||||||||||||||||||||| ||||||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttata 8462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 35998252 - 35998330
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||| |||||||||||||| |||| |||||| |||||   ||| |||||||||||| || |||||||| ||||||    
T  35998252 ccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttata 35998330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 3688980 - 3688931
Alignment:
Q  245 tatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||| ||||| ||||||||||||| | |||||||||||||||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttata 3688931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 265  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 19357435 - 19357348
Alignment:
Q  213 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgct 19357348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 9827778 - 9827866
Alignment:
Q  206 atattggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||||| ||||||||||    
T  9827778 atattggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttata 9827866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 11607710 - 11607627
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttata 11607627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 39570219 - 39570136
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttata 39570136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 1826254 - 1826343
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgct 1826343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 38010785 - 38010707
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttata 38010707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 13015376 - 13015459
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttata 13015459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 33858704 - 33858631
Alignment:
Q  221 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||| ||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttata 33858631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 13086753 - 13086831
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||| ||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttata 13086831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 29989962 - 29990040
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttata 29990040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 13478216 - 13478138
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||| ||||| ||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttata 13478138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 33271630 - 33271698
Alignment:
Q  232 aaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||||| |||| |||||| |||||||||||||||||||| || ||| ||||||||||| ||| |||||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgct 33271698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 13421180 - 13421097
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||||||||||  |||| |||||| |||||  |||| |||||||  ||  || ||||||||||||||| |||||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgct 13421097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 48250149 - 48250238
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| ||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48250149 ggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgct 48250238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 35341531 - 35341614
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttata 35341614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 40893219 - 40893129
Alignment:
Q  210 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| |||||||| |||  || ||| ||||||||||||||| |||||    
T  40893219 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgct 40893129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 31307041 - 31306960
Alignment:
Q  220 ttgtgtaccattaaggtactaatggtatataccattggccaatt-agagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||||||||||||| |||  |||| |||||| ||||| |||||| | ||||||| ||||||||||||||||||||| |||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgct 31306960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 48072385 - 48072465
Alignment:
Q  212 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||| |||||||||| ||| |  ||||||||||  ||||||||||||||||| |  |||||||| ||||||    
T  48072385 gattccacttgtgtactattaaggtaccaatag--tataccattgatcaattagagtgtgccacatttcaatgttattttata 48072465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 32694721 - 32694663
Alignment:
Q  236 tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||| |||||||||||||  ||||||||||| ||| ||| |||||||||||||||    
T  32694721 tactaatgatatataccattggtaaattagagtgtcccatctatcaatgttactttata 32694663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 40856387 - 40856456
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 280  Q
    |||| |||||| |||| |||||||||||||||| ||||||  ||||  ||||||||||||| ||||||||    
T  40856387 ggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  239 taatggtatataccattggccaattagagtgtgccac 275  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 34189 - 34272
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||| ||||||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttata 34272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 5404052 - 5403965
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatg 298  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||| |||||||||||||||||||||||||||||    
T  5404052 ggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatg 5403965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 1212020 - 1211931
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  |||||||||||||| ||||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgct 1211931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacca 281  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 34245567 - 34245645
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| ||||||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttata 34245645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 11113557 - 11113631
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttacttt 291  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||| |||||||| ||| ||| |||||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttacttt 11113631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 32645013 - 32644931
Alignment:
Q  210 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta 292  Q
    |||||||||| |||||||||||||| ||   || ||||||| |||||||||||||  ||||| ||||||| ||||||||||||    
T  32645013 tggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta 32644931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 13182 - 13093
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  |||||||||||||| ||||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgct 13093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 24338006 - 24337917
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    |||| |||||||||||| |||||||||  ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  24338006 ggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgct 24337917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 41179739 - 41179656
Alignment:
Q  211 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| |||||||| |||||||||||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttata 41179656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 18168392 - 18168463
Alignment:
Q  223 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||||| ||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttata 18168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 18631949 - 18632020
Alignment:
Q  223 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||||| ||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttata 18632020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 1514803 - 1514881
Alignment:
Q  216 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| ||||||| |||| ||||||||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttata 1514881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 4708470 - 4708400
Alignment:
Q  224 gtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||| |||||||| ||||| ||||| |||  |||||||| |||||| ||||||||||||||||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttata 4708400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 11254202 - 11254121
Alignment:
Q  212 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||  ||| |||| |||||| ||||| || |||| ||| | |||||||||||||||||||||||    
T  11254202 gattccacttgtgtaccattaaattaccaatgatatatatcattgacc-attatagtataccacctaccaatgttactttata 11254121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 32826005 - 32825928
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||| |||  |||| | |||||||||||||||||||||| || ||| || |||||||| ||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttata 32825928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 23263 - 23192
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    |||||||||||||||||||||| |      |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttata 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  217 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 265  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 73065 - 73155
Alignment:
Q  210 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgct 300  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| |||||||| |||  || ||| ||||||||||||||| |||||    
T  73065 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgct 73155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 11191 - 11272
Alignment:
Q  212 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttata 294  Q
    ||||||||||||||||||||||  ||| |||| |||||| ||||| || |||| ||| | |||||||||||||||||||||||    
T  11191 gattccacttgtgtaccattaaattaccaatgatatatatcattgacc-attatagtataccacctaccaatgttactttata 11272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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