View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2767_high_33 (Length: 288)
Name: NF2767_high_33
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 48 - 273
Target Start/End: Original strand, 4346782 - 4347007
Alignment:
| Q |
48 |
tttaggggtgagacaaagggaatactattatattatgtttcatattataaattactaaccttttcaataattgaaattcattaacttacatgaattaatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346782 |
tttaggggtgagacaaagggaatactattatattatgtttcatattataaattactaaccttttcaataattgaaattcattaacttacatgaattaatt |
4346881 |
T |
|
| Q |
148 |
ttcacatatgtttaaatgtcttattaataggttagtaatttctttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggtttagaagcctaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346882 |
ttcacatatgtttaaatgtcttattaataggttagtaatttctttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggtttagaagcctaa |
4346981 |
T |
|
| Q |
248 |
aataatggttcgtaatggttcaagtt |
273 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4346982 |
aataatggttcgtaatggttcaagtt |
4347007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 52 - 273
Target Start/End: Original strand, 4336084 - 4336318
Alignment:
| Q |
52 |
ggggtgagacaaagggaatactattatattatgtttcatattataaat-------------tactaaccttttcaataattgaaattcattaacttacat |
138 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4336084 |
ggggtgaaacaaagggaatactattatattatgtttcatattttaaattatattataaaattactaaccttttcaataatttaaattcattaacttacat |
4336183 |
T |
|
| Q |
139 |
gaattaattttcacatatgtttaaatgtcttattaataggttagtaatttctttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4336184 |
gaattaattttcacatatgtttaaatgtcttattaataggttagtaatttctttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttct |
4336283 |
T |
|
| Q |
239 |
gaagcctaaaataatggttcgtaatggttcaagtt |
273 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4336284 |
gaagccttaaataatggttcgtaatggttcaagtt |
4336318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 4398450 - 4398593
Alignment:
| Q |
48 |
tttaggggtgagacaaagggaatactattatattatgtttcatattataaat-------------tactaaccttttcaataattgaaattcattaactt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4398450 |
tttaggggtgagacaaagggaatactattatattatgtttcatattttaaattatattataaaattactaaccttttcaataatttaaattcattaactt |
4398549 |
T |
|
| Q |
135 |
acatgaattaattttcacatatgtttaaatgtcttattaatagg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398550 |
acatgaattaattttcacatatgtttaaatgtcttattaatagg |
4398593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 4331977 - 4332067
Alignment:
| Q |
183 |
taatttctttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggtttagaagcctaaaataatggttcgtaatggttcaagtt |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4331977 |
taatttctttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttcagaagccttaaataatggttcgtaatggttcaagtt |
4332067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 4340250 - 4340303
Alignment:
| Q |
48 |
tttaggggtgagacaaagggaatactattatattatgtttcatattataaatta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| |
|
|
| T |
4340250 |
tttaggggtgagacaaagggaatactattatattatgttttatgttttaaatta |
4340303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University