View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_high_39 (Length: 263)

Name: NF2767_high_39
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_high_39
NF2767_high_39
[»] chr7 (6 HSPs)
chr7 (133-248)||(42938001-42938116)
chr7 (22-132)||(34326334-34326443)
chr7 (58-132)||(42937538-42937612)
chr7 (58-132)||(42939838-42939912)
chr7 (25-124)||(34322389-34322487)
chr7 (22-80)||(7280157-7280214)
[»] chr4 (12 HSPs)
chr4 (133-248)||(12753190-12753305)
chr4 (22-132)||(2928876-2928985)
chr4 (57-132)||(12753720-12753795)
chr4 (187-249)||(17366554-17366616)
chr4 (58-132)||(22746593-22746667)
chr4 (187-248)||(54680911-54680972)
chr4 (178-249)||(17350851-17350922)
chr4 (187-248)||(26993156-26993217)
chr4 (178-248)||(13995906-13995976)
chr4 (58-108)||(2923957-2924007)
chr4 (58-132)||(8563752-8563826)
chr4 (62-114)||(24857901-24857953)
[»] chr8 (6 HSPs)
chr8 (24-132)||(36911987-36912094)
chr8 (58-132)||(23429640-23429714)
chr8 (22-132)||(15007069-15007178)
chr8 (184-248)||(29183541-29183605)
chr8 (58-132)||(22274787-22274861)
chr8 (131-182)||(22275294-22275345)
[»] chr5 (4 HSPs)
chr5 (133-248)||(29741615-29741733)
chr5 (22-132)||(29742173-29742282)
chr5 (72-132)||(18079995-18080055)
chr5 (198-248)||(7822048-7822098)
[»] chr1 (5 HSPs)
chr1 (58-132)||(145414-145488)
chr1 (187-242)||(36688272-36688327)
chr1 (187-249)||(29531164-29531226)
chr1 (58-114)||(3850453-3850509)
chr1 (65-121)||(27317669-27317725)
[»] chr6 (2 HSPs)
chr6 (63-132)||(25398177-25398245)
chr6 (65-133)||(25393859-25393927)
[»] chr2 (3 HSPs)
chr2 (187-246)||(25226911-25226970)
chr2 (59-132)||(26195386-26195459)
chr2 (187-247)||(19909668-19909728)
[»] chr3 (2 HSPs)
chr3 (190-244)||(44125772-44125826)
chr3 (58-130)||(15636318-15636390)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 42938001 - 42938116
Alignment:
Q  133 gtccttaaaggattgcttaaacaatgaaaatcttttataatacagttcctaaaaaactaaatatatatgaaggtcaaaagaattgtcactgaaggattgc 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42938001 gtccttaaaggattgcttaaacaatgaaaatcttttataatacagttcctgaaaaactaaatatatatgaagatcaaaagaattgtcactgaaggattgc 42938100  T
Q  233 aaacaatcaaattttt 248  Q
    ||||||||||||||||    
T  42938101 aaacaatcaaattttt 42938116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 34326334 - 34326443
Alignment:
Q  22 cccttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagaccta 121  Q
    |||||||| ||||||||||||  |||||| ||| | |||| |||||||||||||||||||||||||||| |||  ||||| |||||||||||||||||||    
T  34326334 cccttccacatgcttgtaactc-ccactaataaatccacttgtaagtgggttgtaatgtgatcattcatatacttatatgcgtcctataaataagaccta 34326432  T
Q  122 cattacaatgt 132  Q
    |||||||||||    
T  34326433 cattacaatgt 34326443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 42937538 - 42937612
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  42937538 cactagtaagtgggttgtaatgtgatcattcatgtacctatatgtgtcctataaataggaccaacattacaatgt 42937612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 42939838 - 42939912
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  42939838 cactagtaagtgggttgtaatgtgttcattcatgcacctatatgtgtcctataaataagacctacattacaatgt 42939912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 34322389 - 34322487
Alignment:
Q  25 ttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacat 124  Q
    ||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||| |||||||||| |||  ||||| ||||||||||||  ||||||||    
T  34322389 ttccacatgcttgtaactc-ccactagtaagttcactggtaagtgggttgtaatgcgatcattcatatacttatatgagtcctataaatagaacctacat 34322487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 7280157 - 7280214
Alignment:
Q  22 cccttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgt 80  Q
    |||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  7280157 cccttccacatgcttgtaactt-ccattagtaagtccactagtaagtgggttgtaatgt 7280214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 12753305 - 12753190
Alignment:
Q  133 gtccttaaaggattgcttaaacaatgaaaatcttttataatacagttcctaaaaaactaaatatatatgaaggtcaaaagaattgtcactgaaggattgc 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  12753305 gtccttgaaggattgcttaaacaatgaaaatcttttataatacagttcttgaaaaactaaatatatatgaagatcaaaagaattgtccctgaaggattgc 12753206  T
Q  233 aaacaatcaaattttt 248  Q
    ||||||||||||||||    
T  12753205 aaacaatcaaattttt 12753190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 2928985 - 2928876
Alignment:
Q  22 cccttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagaccta 121  Q
    |||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||    
T  2928985 cccttccacatgcttgtaa-ttcccactagtaagtccactagtaagtgggttgtaatgtgatcattcatatatctatatgtgtcctataaataggaccta 2928887  T
Q  122 cattacaatgt 132  Q
    |||||||||||    
T  2928886 cattacaatgt 2928876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 12753795 - 12753720
Alignment:
Q  57 tcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  12753795 tcactagtaagtggattgtaatgtgatcattcatgtacctatatgtgtcttataaataggacctacattacaatgt 12753720  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 17366554 - 17366616
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaatttttt 249  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  17366554 aactaaatatatatgaagatcaaaagaattgtccctgaaggattgcaaacaatcaagtttttt 17366616  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 22746593 - 22746667
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    ||||| ||||||||||||||||||  || ||||||||| |||||||||||||||||| |||||||||||||||||    
T  22746593 cactaataagtgggttgtaatgtgtccactcatgtacctatatgtgtcctataaataggacctacattacaatgt 22746667  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 54680972 - 54680911
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaattttt 248  Q
    |||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||    
T  54680972 aactaaatatatatgaagatcaaatgatttgtccctgaaggattgcaaacaatcaaattttt 54680911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 17350851 - 17350922
Alignment:
Q  178 ttcctaaaaaactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaatttttt 249  Q
    ||||| || |||||||||||||||||| |||||||||||||| | |||||||| ||||||||||| ||||||    
T  17350851 ttcctgaagaactaaatatatatgaagatcaaaagaattgtctccgaaggattccaaacaatcaattttttt 17350922  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 26993156 - 26993217
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaattttt 248  Q
    |||||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||    
T  26993156 aactaaatatatatgaagatcaaatgatttgtccctgaaggatcgcaaacaatcaaattttt 26993217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 13995906 - 13995976
Alignment:
Q  178 ttcctaaaaaactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaattttt 248  Q
    ||||| || ||||||||||| | |||| ||||||||||| || |||||||||| |||||||||||||||||    
T  13995906 ttcctgaagaactaaatatacacgaagatcaaaagaattatccctgaaggattccaaacaatcaaattttt 13995976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 2924007 - 2923957
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtccta 108  Q
    ||||||||||||| |||||||||||||||||||||| | | ||||||||||    
T  2924007 cactagtaagtggattgtaatgtgatcattcatgtatctacatgtgtccta 2923957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 8563826 - 8563752
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    ||||||| ||||| ||||||| ||||||||||| ||   ||||||||||||||||||  ||||| ||||||||||    
T  8563826 cactagtgagtggattgtaatatgatcattcatttatatatatgtgtcctataaatagaacctatattacaatgt 8563752  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 24857953 - 24857901
Alignment:
Q  62 agtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaata 114  Q
    ||||||||| |||||||||| | |||||| |||| || |||||||||||||||    
T  24857953 agtaagtggattgtaatgtgcttattcatttacctatttgtgtcctataaata 24857901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 36912094 - 36911987
Alignment:
Q  24 cttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctaca 123  Q
    |||||| ||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  36912094 cttccacatgcttgtaactc-ccactagtaaattcattagtaagtgggttgtaatgtgatcattcatgtacctatatgtatcctataaataggacctaca 36911996  T
Q  124 ttacaatgt 132  Q
    |||||||||    
T  36911995 ttacaatgt 36911987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 23429640 - 23429714
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  23429640 cactagtaagtgggttgtaatgtgatcattcatgtacctatatgtgtcctataaataggacctacattacaatgt 23429714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 15007069 - 15007178
Alignment:
Q  22 cccttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagaccta 121  Q
    ||||| || ||||||||||||  |||||||||| | |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||  ||||||    
T  15007069 ccctttcacatgcttgtaactc-ccactagtaattccactagtaagcgggttgtaatgtgatcattcatgtatctatatgtgtcctataaatgggaccta 15007167  T
Q  122 cattacaatgt 132  Q
    |||||||||||    
T  15007168 cattacaatgt 15007178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 29183605 - 29183541
Alignment:
Q  184 aaaaactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaattttt 248  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  29183605 aaaaactaaatatatatgaagatcaaaagaattgtccctgaaggattgcaaacaatcaaattttt 29183541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 22274787 - 22274861
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||    
T  22274787 cactagtaagtgggttctaatgtgatcattcatgtacctatatttgttctataaataggacctacattacaatgt 22274861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 22275294 - 22275345
Alignment:
Q  131 gtgtccttaaaggattgcttaaacaatgaaaatcttttataatacagttcct 182  Q
    ||||| || |||||||||||||||||||||||| ||||||||||||||||||    
T  22275294 gtgtctttgaaggattgcttaaacaatgaaaatattttataatacagttcct 22275345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 29741733 - 29741615
Alignment:
Q  133 gtccttaaaggattgcttaaacaatgaaaatcttttataatacagttcctaaaaaactaaatatat---atgaaggtcaaaagaattgtcactgaaggat 229  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||   |||||| |||||||| ||||| ||||| |||    
T  29741733 gtccttgaaggattgcttaaacaatggaaatcttttataatacagttcctgaagaactaaatatatatgatgaagatcaaaagagttgtccctgaacgat 29741634  T
Q  230 tgcaaacaatcaaattttt 248  Q
    |||||||||||||||||||    
T  29741633 tgcaaacaatcaaattttt 29741615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 29742282 - 29742173
Alignment:
Q  22 cccttccagatgcttgtaactttccactagtaagttcactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagaccta 121  Q
    |||||||| ||||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||    
T  29742282 cccttccacatgcttgtaactc-ccactagtaagtccactactaagtgggttgtaatgtgatcattcatgtacttatatgtgtcatataaataggaccta 29742184  T
Q  122 cattacaatgt 132  Q
    ||||| |||||    
T  29742183 cattaaaatgt 29742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 18080055 - 18079995
Alignment:
Q  72 ttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  18080055 ttgtaatgtgatcattcatgtacctatatgtgtcctataaataggacctacattacaatgt 18079995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 7822098 - 7822048
Alignment:
Q  198 tatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaattttt 248  Q
    ||||||| | ||||||||||||  |||||||||||||||||||||||||||    
T  7822098 tatgaagattaaaagaattgtccttgaaggattgcaaacaatcaaattttt 7822048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 145488 - 145414
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  145488 cactattaagtggattgtaatgtgatcattcatgtacctatatgcgtcctataaataggacctacattacaatgt 145414  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 36688272 - 36688327
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaa 242  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36688272 aactagatatatatgaagatcaaaagaattgtccctgaaggattgcaaacaatcaa 36688327  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 29531164 - 29531226
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaatttttt 249  Q
    |||||||||| ||||||| |||| ||||||||| | |||||||||||||||||||| ||||||    
T  29531164 aactaaatatgtatgaagatcaatagaattgtccccgaaggattgcaaacaatcaattttttt 29531226  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 3850509 - 3850453
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaata 114  Q
    ||||||||||||| ||| |||||||| |||||| |||| || |||||||||||||||    
T  3850509 cactagtaagtggattgaaatgtgattattcatttacctatttgtgtcctataaata 3850453  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 27317669 - 27317725
Alignment:
Q  65 aagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagaccta 121  Q
    |||||| |||||||| ||| |||||| |||| || ||||||||||||||| ||||||    
T  27317669 aagtggattgtaatgcgattattcatttaccaatttgtgtcctataaatatgaccta 27317725  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 25398177 - 25398245
Alignment:
Q  63 gtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  25398177 gtaagtgggttgtaatgtgatcattcatgta-ctatatgtgtcctataaataggacctacattacaatgt 25398245  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 25393859 - 25393927
Alignment:
Q  65 aagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgtg 133  Q
    ||||||||| ||||||||||||| ||||||  |||||||||||||||||| || |||||||||||||||    
T  25393859 aagtgggttctaatgtgatcatttatgtacatatatgtgtcctataaataggatctacattacaatgtg 25393927  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 25226911 - 25226970
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaattt 246  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  25226911 aactaaatatatatgaagatcaatagaattgtccctgaaggattgcaaacaatcaaattt 25226970  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 26195386 - 26195459
Alignment:
Q  59 actagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaatgt 132  Q
    |||||| ||||| ||||||||||||| | ||| |||| |||||||||||||||||| |||||| ||| ||||||    
T  26195386 actagtgagtggattgtaatgtgatcttccatttacctatatgtgtcctataaataggacctatattgcaatgt 26195459  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 19909668 - 19909728
Alignment:
Q  187 aactaaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaatttt 247  Q
    |||||||||||||||||| ||||| |  ||||| ||||| |||||||||||||||||||||    
T  19909668 aactaaatatatatgaagatcaaatggtttgtccctgaacgattgcaaacaatcaaatttt 19909728  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 44125826 - 44125772
Alignment:
Q  190 taaatatatatgaaggtcaaaagaattgtcactgaaggattgcaaacaatcaaat 244  Q
    |||||||||||||||  |||| || ||||  ||||||||||||||||||||||||    
T  44125826 taaatatatatgaagaacaaatgatttgttcctgaaggattgcaaacaatcaaat 44125772  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 15636390 - 15636318
Alignment:
Q  58 cactagtaagtgggttgtaatgtgatcattcatgtacccatatgtgtcctataaataagacctacattacaat 130  Q
    ||||||| ||||| |||||||||||||| | || | || |||| |||| |||||||| ||| |||||||||||    
T  15636390 cactagtgagtggattgtaatgtgatcaattatttgcctatatatgtcttataaataggacatacattacaat 15636318  T

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