View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_46 (Length: 250)
Name: NF2767_high_46
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4346670 - 4346432
Alignment:
| Q |
1 |
ctaatctcacggagacataattactgtttggtaaatagatttaaaaagtgcacactttcggtnnnnnnnnnnnnnnnnnccgagtgactactatctatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4346670 |
ctaatctcacggagacataattactgtttggtaaatagatttaaaaagtgcacactttcggtaaaaaattaaaataaaaccgagtgactactatctatgt |
4346571 |
T |
|
| Q |
101 |
gaatctccatatacatcttaatatgcacaattaataacttcttcatcaacgttagccatgacttgtagaaaaatagaagtttatgttggaacaatagt-n |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4346570 |
gaatctccatatacatcttaatatgcacaattaataacttcttcatcaacgttagccatgacttgtagaaaaatagaagtttatgttggaacaatagtaa |
4346471 |
T |
|
| Q |
200 |
nnnnnntagttgaaaatatttttggttattgaagatatt |
238 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4346470 |
aaaaaatagttgaaaatatttttggttattgaagatatt |
4346432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4340136 - 4339898
Alignment:
| Q |
1 |
ctaatctcacggagacataattactgtttggtaaatagatttaaaaagtgcacactttcggtnnnnnnnnnnnnnnnnnccgagtgactactatctatgt |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
4340136 |
ctaatctcacggagacataattgctgtttggtaaatagatttaaaaagtgcacactttcggtaaaaaattaaaataaaaccgagtgactactctctatgc |
4340037 |
T |
|
| Q |
101 |
gaatctccatatacatcttaatatgcacaattaataacttcttcatcaacgttagccatgacttgtagaaaaatagaagtttatgttggaacaatagt-n |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4340036 |
gaatctccatatacatcttaatatgcacaattaataacttcttgatcaacattagccgtgacttgtagaaaaatagaagtttatgttggaacaatagtaa |
4339937 |
T |
|
| Q |
200 |
nnnnnntagttgaaaatatttttggttattgaagatatt |
238 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4339936 |
aaaaaatagttgaaaatatttttggttattgaagatatt |
4339898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4398335 - 4398097
Alignment:
| Q |
1 |
ctaatctcacggagacataattactgtttggtaaatagatttaaaaagtgcacactttcggtnnnnnnnnnnnnnnnnnccgagtgactactatctatgt |
100 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
4398335 |
ctaatctcacagagacataattgctgtttggtaaatagatttaaaaagtgcacactttcggtaaaaagttaaaataaaacccagtgactactatctatgc |
4398236 |
T |
|
| Q |
101 |
gaatctccatatacatcttaatatgcacaattaataacttcttcatcaacgttagccatgacttgtagaaaaatagaagtttatgttggaacaatagt-n |
199 |
Q |
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|
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4398235 |
gaatctccatatacatcttaatatgcaaaattagtaacttcttcatcaacattagccatgacttgtagaaaaatagaagtttatgttggaacaatagtaa |
4398136 |
T |
|
| Q |
200 |
nnnnnntagttgaaaatatttttggttattgaagatatt |
238 |
Q |
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| ||||||||||||||||||||||||||||||| |
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| T |
4398135 |
aaaaaattgttgaaaatatttttggttattgaagatatt |
4398097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4335965 - 4335728
Alignment:
| Q |
1 |
ctaatctcacggagacataattactgtttggtaaatagatttaaaaagtgcacactttcggtnnnnnnnnnnnnnnnnnccgagtgactactatctatgt |
100 |
Q |
| |
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|||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
4335965 |
ctaatcccacggagacataattgctgtttgataaatagatttaaaa-gtgcacactttcggtaagaaattaaaataaaaccgagtgactactatctatgc |
4335867 |
T |
|
| Q |
101 |
gaatctccatatacatcttaatatgcacaattaataacttcttcatcaacgttagccatgacttgtagaaaaatagaagtttatgttggaacaatagt-n |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4335866 |
gaatctccatatacatcttaatatgcgcaattaataacttcttgatcaacattagccatgacttgtagaaaaatagaagtttatgttggaacaatagtaa |
4335767 |
T |
|
| Q |
200 |
nnnnnntagttgaaaatatttttggttattgaagatatt |
238 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
4335766 |
aaaaaatagttgaaaatattttttgttattgaagatatt |
4335728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 4477526 - 4477570
Alignment:
| Q |
98 |
tgtgaatctccatatacatcttaatatgcacaattaataacttct |
142 |
Q |
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|||||| |||||| ||||||||||| |||||||||||||| |||| |
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| T |
4477526 |
tgtgaaactccatttacatcttaatgtgcacaattaataatttct |
4477570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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