View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_5 (Length: 560)
Name: NF2767_high_5
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 6e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 41547939 - 41547806
Alignment:
| Q |
18 |
aagggattccaaaacaagaccagattccagaatccagacacattcacgagaaagaggactaaacaagacaaaggtcacaaaaccgatcttaaacctcagn |
117 |
Q |
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| T |
41547939 |
aagggattccaaaacaagaccagattccagaatccagacacattcacgagaaagaggactaaacaagacaaaggtcacaaaaccgatcttaaacctcaga |
41547840 |
T |
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| Q |
118 |
nnnnnncggatctcacaaaaagtaaccaattcac |
151 |
Q |
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| T |
41547839 |
aaaaaacggatctcacaaaaagtaaccaattcac |
41547806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 403 - 553
Target Start/End: Complemental strand, 41547531 - 41547382
Alignment:
| Q |
403 |
taatctcaaaccccaaagataaacccaacaacagnnnnnnnnnctctctttcaacaaaacaaacnnnnnnnnnngttagcatattttaaggaaacaaatc |
502 |
Q |
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| T |
41547531 |
taatctcaaaccccaaagataaacccaacaacagtttttttttctctctttcaacaaaacaaacaaaaaaaaa-gttagcatattttaaggaaacaaatc |
41547433 |
T |
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| Q |
503 |
aaacccatcaaagattcagcnnnnnnntcacctttccccacagaattatct |
553 |
Q |
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| T |
41547432 |
aaacccatcaaagattcaacaaaaaaatcacctttccccacagtattatct |
41547382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 41547664 - 41547632
Alignment:
| Q |
270 |
aaacaactcacgaattgtgtaaacagtgttccg |
302 |
Q |
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| T |
41547664 |
aaacaactcacgaattgtgtaaacagtgttccg |
41547632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 41547712 - 41547676
Alignment:
| Q |
218 |
gatcaacaaaaccaaaagagtgcataaacagagatga |
254 |
Q |
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| T |
41547712 |
gatcaacaaaaccaaaagaatgcataaacagagatga |
41547676 |
T |
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