View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_52 (Length: 215)
Name: NF2767_high_52
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 17393092 - 17392908
Alignment:
| Q |
13 |
cagatagaaaaagatccatgctataacagcaaaggatgcttgggaaattatgctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggct |
112 |
Q |
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| T |
17393092 |
cagatagaaaaagatccatgctataacagcaaaggatgcatgggaaattatgctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggct |
17392993 |
T |
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| Q |
113 |
catcacgaaaattgagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagcctatattgttcaaac |
197 |
Q |
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| T |
17392992 |
catcacgaaaattgagttaacaaaacaatgcaaagatgaaagtattggaaaaccattgacttgaataagcctatattgttcaaac |
17392908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 17377888 - 17377798
Alignment:
| Q |
108 |
tggctcatcacgaaaatt-gagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagcctatattgttcaaac |
197 |
Q |
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| T |
17377888 |
tggctcatcgcgaaaatttgagctaacaaaacaatgcaaagaagaaagtattggcagactactgatttatataagcctatattgttaaaac |
17377798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 17389774 - 17389698
Alignment:
| Q |
28 |
ccatgctataacagcaaaggatgcttgggaaattatgctcaataca----aaggcgtagatccaatttaacagacaa |
100 |
Q |
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| T |
17389774 |
ccatgctataacagcaaaggaagcttggtaaattatgctcaatacatacaaagaagtagatccaatttaagagacaa |
17389698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 17384248 - 17384211
Alignment:
| Q |
156 |
attggaagaccattgacttgaataagcctatattgttc |
193 |
Q |
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| T |
17384248 |
attggtagaccattgatttgaataagcctatattgttc |
17384211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 26052462 - 26052646
Alignment:
| Q |
13 |
cagatagaaaaagatccatgctataacagcaaaggatgcttgggaaattatgctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
26052462 |
cagatagaaaaagatccatgctataacagcaaaggatccttgggaaattatgctcaatacaaaagtgtaaatccaatttaacagacaaggtagcatggct |
26052561 |
T |
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| Q |
113 |
catcacgaaaattgagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagcctatattgttcaaac |
197 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | | |||| |||||||||||||||| |
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| T |
26052562 |
catcacgaaaattgagttaacaaaacaatgcacagatgaaagtattggcggaccattgattagtataaacctatattgttcaaac |
26052646 |
T |
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