View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_high_8 (Length: 545)
Name: NF2767_high_8
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Complemental strand, 55716420 - 55715913
Alignment:
| Q |
19 |
gggaagactcaactgagaaaatagttggcactctgttctagtgctctgattagtttcaggaagaaaactagtatagttgattttgtctcgataaaatgtc |
118 |
Q |
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| T |
55716420 |
gggaagactcaactgagaaaatagttggcactctgttctagtgctctgattagtttcaggaagaaaactagtatagttgattttgtctcaataaaatgtc |
55716321 |
T |
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| Q |
119 |
attttactaactgataggaggagcaatggggtgactttggggatgatatgaataatggaggatagcatagtaacatgagtatgtttggattgatgaaatg |
218 |
Q |
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| T |
55716320 |
attttactaactgataggaggagcaatggggtgactttggggatgatatgaataatggaggatagcatagtaacatgagtatgtttggattgatgaaatg |
55716221 |
T |
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| Q |
219 |
agttttgaatgaatagaatgatgcactattccattgtttggattattttaaagaattatggaacgaaacctagtagcatataatccatctcattttatca |
318 |
Q |
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| T |
55716220 |
agttttgaatgaatagaatgatgctctattccattgtttggattattttaaagaattatggaacgaaacctagtagcatataatccatctcattttatca |
55716121 |
T |
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| Q |
319 |
cttttcccgagtttcctttcatttcaatttggttataccggatttggattcacctacatatcaacttaatttcatatctttaagattactaattaaaccc |
418 |
Q |
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| T |
55716120 |
cttttcccgagtttcctttcatttcaatttggttataccggatttggattcacctacatatcaacttaatttcatatctttaagattactaattaaaccc |
55716021 |
T |
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| Q |
419 |
tatttctcaaaatgcaactgtgtgattacagat-gttactctagcaccagttgctaattttttctgaagtactgattacttgagcaataacttcgaccgg |
517 |
Q |
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| T |
55716020 |
tatttctcaaaatgcaactgtgtgattacagatagttactctagcaccagttgctaattttttctgaagtactgattacttgagcaataacttcgaccgg |
55715921 |
T |
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| Q |
518 |
tacaacac |
525 |
Q |
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| T |
55715920 |
tacaacac |
55715913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 55715368 - 55715276
Alignment:
| Q |
229 |
gaatagaatgatgcactattccattgtttggattattt-taaagaattatggaacgaaacctagtagcatat-aatccatctcattttatcac |
319 |
Q |
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| T |
55715368 |
gaatagaatgatgctatattccattatttggattatttgaaaacaattatggaacgaaacttggtagcatctaaatccatctcatcttatcac |
55715276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 55715156 - 55715083
Alignment:
| Q |
450 |
atgttactctagcaccagttgctaattt-tttctgaagtactgattacttgagcaataacttcgaccggtacaa |
522 |
Q |
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| T |
55715156 |
atgttactccggcaccagttgctaactgctttttgaagtactgattacttgagaaataacttcaatcggtacaa |
55715083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 55715274 - 55715206
Alignment:
| Q |
377 |
tatcaacttaatttcatatctttaagattactaattaaaccctatttctcaaaatgcaactgtgtgatta |
446 |
Q |
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| T |
55715274 |
tatcaacttaattg-atatctattagattactaattaaactctatttctcacagttcaactgtgtgatta |
55715206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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