View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_17 (Length: 432)
Name: NF2767_low_17
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 3036688 - 3036285
Alignment:
| Q |
12 |
agagaccaaacaaattgacgttggaatttttccgctgaagaggatggactcgccggttgataaacctctcctttctactaggttccctcaccggaaacct |
111 |
Q |
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| T |
3036688 |
agagaccaaacaaattgacgttggaatttttccactgaagaggatggactcgccggttgataaacctctcctttctactaggttcactcaccggaaacct |
3036589 |
T |
|
| Q |
112 |
cttaaattcggtccagaaggtatcannnnnnncacacattaattttggaaacaaacaccaattcatttcttataaaataaaataaaaacaatttatcccc |
211 |
Q |
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| T |
3036588 |
cttaaattcggtccagaaggtatcatttttttcacttattaattttgacaacaaacaccaattcatttcttataaaataaaataaaaacaatttatcccc |
3036489 |
T |
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| Q |
212 |
ttgnnnnnnntgtcttataattgtggttgatgaaaattaaactcgttttaaaatagggataatggtaaactatagttttaaattttttgaaaag-nnnnn |
310 |
Q |
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| T |
3036488 |
ttgaaaaaaatgtcttataattgtggttgatgaaaattaaactcgttttaaaatagggataatggtaaactatagtttt-aattttttgaaaagaaaaaa |
3036390 |
T |
|
| Q |
311 |
nnttgactatagtt-aataatttatctattaattataaaagaatgttgtcgttttgttaactgcatggtgttttctttgttcttatataggtgggaagtc |
409 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036389 |
aattgactatagttaaataatttatctatgaattataaaagaatgttgtcgttttgttaactgcatggtgttttctttgttcttatataggtgggaagtc |
3036290 |
T |
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| Q |
410 |
gttga |
414 |
Q |
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| T |
3036289 |
gttga |
3036285 |
T |
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