View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2767_low_21 (Length: 386)
Name: NF2767_low_21
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 55101825 - 55101513
Alignment:
| Q |
8 |
agattatacttggtactgaccagatatccattttccatacgttggtaaatgtcaaatgttacagaaatgttcccatttggatccaaagggtcatagcaat |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55101825 |
agattttacttggtactgaccagatatccattttccatacgttggtaaatgtcaaatgttacagaaatgttcccatttggatccaaagggtcatagcaat |
55101726 |
T |
|
| Q |
108 |
ctgcatacaagtgtgaaatgagcnnnnnnnta---ttaaaagtcaaattagcaagaacagaatagaatagaagtggcagaagaaggagaagtgcatgcag |
204 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55101725 |
ctgcatacaagtgtgaaatgagcaaaaaaaaaaaattaaaagtcaaattagcaagaacagaatagaatagaagtggcagaagaaggagaagtgcatgcag |
55101626 |
T |
|
| Q |
205 |
cacctgataaagtgcagagagtagtaattaacaaaatcaacttaagtacagcagaaagatatacacggtgaacagttagcatcattttttccctacaaag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55101625 |
cacctgataaagtgcagagagtagtaattaacaaaatcaacttaagtacagcagaaagatatacacggtgaacagttagcatcattttttccctacaaag |
55101526 |
T |
|
| Q |
305 |
aatatgagacaga |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55101525 |
aatatgagacaga |
55101513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 55101513 - 55101466
Alignment:
| Q |
339 |
aatagaagtttgtgtgtcaagtcaaataatatcgagaagcccgttatc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55101513 |
aatagaagtttgtgtgtcaagtcaaataatatcgagaagcccgttatc |
55101466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University