View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_25 (Length: 368)
Name: NF2767_low_25
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 46711974 - 46711637
Alignment:
| Q |
19 |
acaattaatcaatatatattgttaatgtgttgtagacatactttctaagtgaaacaccagctccacttcttaagtatagagaagaagaacttgaaacctt |
118 |
Q |
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| T |
46711974 |
acaattaatcaatatatattgttaatgtgttgtagacatactttctaagtgaaacaccagctccacttcttaagtatagagaagaagaacttgaaacctt |
46711875 |
T |
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| Q |
119 |
aagaggctctggagataacatccaactgaaagaatgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatat |
218 |
Q |
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| T |
46711874 |
aagaggctctggagatagcatccaactgaaagaatgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatat |
46711775 |
T |
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| Q |
219 |
gttcgtccagttcttggagggtccagtgaatatccttaccctcgcaggggaagaactaatagaccacccgcaaagtcaggttcggcttttccacaatgat |
318 |
Q |
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| T |
46711774 |
gttcgtccagttcttggagggtccagtgaatatccttaccctcgcaggggaagaactaatagaccacccgcaaagtcaggttcggcttttccacaatgat |
46711675 |
T |
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| Q |
319 |
caccagtttaataattatttactcgcaattaatatatt |
356 |
Q |
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| T |
46711674 |
caccagtttaataattatttactcgcaattaatatatt |
46711637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 36923552 - 36923674
Alignment:
| Q |
153 |
tgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatc |
252 |
Q |
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| T |
36923552 |
tgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatc |
36923651 |
T |
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| Q |
253 |
cttaccctcgcaggggaagaact |
275 |
Q |
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| T |
36923652 |
cttaccctcgcaggggaagaact |
36923674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 6371444 - 6371410
Alignment:
| Q |
49 |
tgtagacatactttctaagtgaaacaccagctcca |
83 |
Q |
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| T |
6371444 |
tgtagacataccttctaagtgaaacaccagctcca |
6371410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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