View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_low_26 (Length: 361)

Name: NF2767_low_26
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_low_26
NF2767_low_26
[»] chr6 (4 HSPs)
chr6 (20-269)||(6134111-6134360)
chr6 (130-198)||(2718762-2718830)
chr6 (134-198)||(2721835-2721899)
chr6 (130-166)||(9771915-9771951)
[»] chr2 (4 HSPs)
chr2 (130-198)||(42237569-42237637)
chr2 (130-198)||(11445479-11445546)
chr2 (135-187)||(12352529-12352581)
chr2 (130-164)||(44705191-44705225)
[»] chr4 (7 HSPs)
chr4 (144-204)||(4848639-4848699)
chr4 (136-204)||(5198998-5199066)
chr4 (130-198)||(16962266-16962333)
chr4 (130-198)||(21315575-21315642)
chr4 (130-204)||(49583148-49583222)
chr4 (132-198)||(46824648-46824713)
chr4 (130-159)||(29866154-29866183)
[»] chr1 (4 HSPs)
chr1 (281-344)||(5051697-5051766)
chr1 (132-188)||(26828570-26828626)
chr1 (145-185)||(16422502-16422542)
chr1 (130-178)||(24909027-24909074)
[»] chr5 (3 HSPs)
chr5 (130-203)||(37247603-37247675)
chr5 (130-180)||(23325342-23325392)
chr5 (135-191)||(21253354-21253410)
[»] chr7 (4 HSPs)
chr7 (130-198)||(6218221-6218288)
chr7 (130-180)||(24118401-24118451)
chr7 (132-178)||(2301336-2301382)
chr7 (137-198)||(8560277-8560338)
[»] scaffold0526 (1 HSPs)
scaffold0526 (130-197)||(3335-3402)
[»] chr8 (4 HSPs)
chr8 (137-204)||(7411339-7411406)
chr8 (132-198)||(3424305-3424370)
chr8 (132-198)||(27054431-27054496)
chr8 (130-198)||(18076463-18076531)
[»] scaffold0472 (1 HSPs)
scaffold0472 (130-198)||(11812-11877)
[»] chr3 (1 HSPs)
chr3 (132-180)||(32104206-32104254)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 6134111 - 6134360
Alignment:
Q  20 attaattctataagacaagttaattttactgacaaaaataacggtcgcagttgcattaatgatttcacaatttctgttgttgcggatattgggttacata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6134111 attaattctataagacaagttaattttactgacaaaaataacggtcgcagttgcattaatgatttcacaatttctgttgttgcggatattgggttacata 6134210  T
Q  120 ttgcacagtttgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttcnnnnnnnnnnnnnnn 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  6134211 ttgcacagtttgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttcttttttctttttttt 6134310  T
Q  220 nnnacaaacaatttcttattatttcttatttgttcccaccatttgctaca 269  Q
       |||||||||||||||||||||||||||||||||||||||||||||||    
T  6134311 tttacaaacaatttcttattatttcttatttgttcccaccatttgctaca 6134360  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 2718830 - 2718762
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    ||||||||||||||| || ||||||| |||||||||| ||||||| ||||| |||||||||||||||||    
T  2718830 tgaattaatcacaacctttcacaaatattattaaaattatttatattatcatataatgtataataactt 2718762  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 2721899 - 2721835
Alignment:
Q  134 ttaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||||||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataataactt 2721835  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 9771951 - 9771915
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaat 166  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9771951 tgaattaatcacaacattgcacaaatgttattaaaat 9771915  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 42237569 - 42237637
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  42237569 tgaattaaccacaacattgcacaaatcttattaaaattatttatattatcaaacaatgtataataactt 42237637  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 11445546 - 11445479
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||||||| | ||| ||| |||||||| |||||||| |||||| |||||||||||||||||    
T  11445546 tgaattaatcacaacaatccacgaatattattaaa-tcatttattctatcatataatgtataataactt 11445479  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 12352529 - 12352581
Alignment:
Q  135 taatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatg 187  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||| ||||||    
T  12352529 taatcacaacattgcacaaatcttattaaacttatttacactatcatataatg 12352581  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 44705225 - 44705191
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaa 164  Q
    ||||| |||||||||||||||||||||||||||||    
T  44705225 tgaatgaatcacaacattgcacaaatcttattaaa 44705191  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 4848699 - 4848639
Alignment:
Q  144 cattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 204  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttc 4848639  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 5198998 - 5199066
Alignment:
Q  136 aatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 204  Q
    ||||| |||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||| |||||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttc 5199066  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 16962333 - 16962266
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||| ||| ||||||||| |||||||| |||||||| |||||| ||||||||||| |||||    
T  16962333 tgaattaatcacgacaatgcacaaatattattaaa-tcatttattctatcatataatgtataaaaactt 16962266  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 21315575 - 21315642
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||||||| ||||||||| |||||  |||||||||| |||||| ||| |||||||||||||    
T  21315575 tgaattaatcacaacaatgcacaaatattatt-taatcatttattctatcatatagtgtataataactt 21315642  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 49583148 - 49583222
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 204  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| |||||    
T  49583148 tgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttc 49583222  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 46824648 - 46824713
Alignment:
Q  132 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||||| ||||||||| |||||  |||||||||| |||||| ||| ||||||| |||||    
T  46824648 aattaatcacaacaatgcacaaatattatt-taatcatttattctatcatatagtgtataagaactt 46824713  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 29866183 - 29866154
Alignment:
Q  130 tgaattaatcacaacattgcacaaatctta 159  Q
    ||||||||||||||||||||||||||||||    
T  29866183 tgaattaatcacaacattgcacaaatctta 29866154  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 5051697 - 5051766
Alignment:
Q  281 cgttcactgaattggagctgtgagatta------agaagcgctttgcgatggatttgcatctcactcctg 344  Q
    |||||| |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  5051697 cgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatctcactcctg 5051766  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 26828626 - 26828570
Alignment:
Q  132 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgt 188  Q
    |||||||||||||||||||||||| |||||||| | |||||||||| || |||||||    
T  26828626 aattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 16422542 - 16422502
Alignment:
Q  145 attgcacaaatcttattaaaatcatttatactatcaaataa 185  Q
    ||||||| |||||||||||||| ||||||||||||| ||||    
T  16422542 attgcacgaatcttattaaaattatttatactatcatataa 16422502  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 24909074 - 24909027
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactat 178  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| ||||    
T  24909074 tgaattaatcacaacaatgcacaaatattatt-aaatcatttattctat 24909027  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 37247675 - 37247603
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgattt 203  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||| ||||    
T  37247675 tgaattaatcacaacaatgcacaaatattatt-aaatcatttattctatcatatagtgtataataacttaattt 37247603  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 23325342 - 23325392
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatca 180  Q
    ||||| |||||||| |||||||| ||||||||||||| ||||| |||||||    
T  23325342 tgaatcaatcacaaaattgcacatatcttattaaaattatttacactatca 23325392  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 21253354 - 21253410
Alignment:
Q  135 taatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtata 191  Q
    ||||||| | ||||| ||||| |||||||| | ||||||||||||| ||||||||||    
T  21253354 taatcacgaaattgctcaaattttattaaacttatttatactatcatataatgtata 21253410  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 6218288 - 6218221
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||    
T  6218288 tgaattaatcacaacaatgcacaaatattatt-aaatcatttattctatcatatagtgtataataactt 6218221  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 24118451 - 24118401
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatca 180  Q
    |||||| |||||||||||| ||||||||||||||||| ||| |||||||||    
T  24118451 tgaattcatcacaacattgtacaaatcttattaaaattattcatactatca 24118401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 2301382 - 2301336
Alignment:
Q  132 aattaatcacaacattgcacaaatcttattaaaatcatttatactat 178  Q
    ||||||||  ||||| ||||||||||| |||||||||||||||||||    
T  2301382 aattaatcgtaacatagcacaaatcttgttaaaatcatttatactat 2301336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 8560277 - 8560338
Alignment:
Q  137 atcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||  ||||||| ||||||||||||| ||||||| || || |||| ||||||||||||    
T  8560277 atcacaatgttgcacatatcttattaaaattatttatattaacatataaagtataataactt 8560338  T

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Target: scaffold0526 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 3402 - 3335
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataact 197  Q
    ||||||||||||||||||||||||||  || | |||| ||||||||||||| |||||| |||||||||    
T  3402 tgaattaatcacaacattgcacaaattataattaaattatttatactatcagataatgcataataact 3335  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 7411339 - 7411406
Alignment:
Q  137 atcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttc 204  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||  ||||||||||||||||| |||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttc 7411406  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 3424305 - 3424370
Alignment:
Q  132 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||||| ||||||| | |||| ||||| ||||||||||||| |||||||||||||||||    
T  3424305 aattaatcacaacaatgcacaa-tattataaaaattatttatactatcatataatgtataataactt 3424370  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 27054431 - 27054496
Alignment:
Q  132 aattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||||||||| | ||||||| |||||||| |||||||| |||||| |||||||||||||||||    
T  27054431 aattaatcacaacaatccacaaatattattaaa-tcatttattctatcatataatgtataataactt 27054496  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 18076463 - 18076531
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||| |||||| ||| | ||||||||||||||||||| |||| | || ||| |||||||||||||||||    
T  18076463 tgaactaatcataacgtagcacaaatcttattaaaattatttgtgctgtcatataatgtataataactt 18076531  T

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Target: scaffold0472 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 11812 - 11877
Alignment:
Q  130 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataactt 198  Q
    |||||||| |||||||||||||||||||||||||||| |||||   ||||||| | |||||||||||||    
T  11812 tgaattaaccacaacattgcacaaatcttattaaaattattta---tatcaaacagtgtataataactt 11877  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 32104206 - 32104254
Alignment:
Q  132 aattaatcacaacattgcacaaatcttattaaaatcatttatactatca 180  Q
    ||||||||||||||| |||||||  |||||||||| |||||| ||||||    
T  32104206 aattaatcacaacatggcacaaacgttattaaaattatttatgctatca 32104254  T

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