View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2767_low_27 (Length: 322)
Name: NF2767_low_27
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 45304943 - 45305227
Alignment:
| Q |
19 |
ttcctcttctatacaattcttccagtgctcttaactgttctggtgttggattccatcttgaactcaccacaactgctgcagatggattattattattatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45304943 |
ttcctcttctatacaattcttccagtgctcttaactgttctggtgttggattccatcttgaactcaccacaactgctgcagatggattattattattatt |
45305042 |
T |
|
| Q |
119 |
caactctgatctcttgctatgatctcctactgatgctataaaacatcatcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
45305043 |
caactctgatctcttgctatgatctcctactgatgctataaaacat-atcatgacacttttagtttaa----acatacatatagtaagtgtaaataagaa |
45305137 |
T |
|
| Q |
219 |
gagaaaagagtatataccttgctgctgcagattgtgatgatattgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305138 |
gagaaaagagtatataccttgctgctgcagattatgatgatactgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagt |
45305227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 40005047 - 40005265
Alignment:
| Q |
90 |
actgctgcagatggattattattattattcaactctgatctcttgctatgatctcctactgatgctataaaacatcatcatgacacttttagtttaaaca |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40005047 |
actgctgcagatggattattattattattcaactctgatctcttgctatgatctcctactgatgctataaaacatcatcatgacacttttagtttacaca |
40005146 |
T |
|
| Q |
190 |
tacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgatattgtgaaaataaatcattgccaccatgaa |
289 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40005147 |
tacatacatatggtaagtgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgatattgtgaaaataaatcattgccaccatgaa |
40005246 |
T |
|
| Q |
290 |
tgcggtttaaggaaggagt |
308 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40005247 |
tgcggtttaaggaaggagt |
40005265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 40220499 - 40220281
Alignment:
| Q |
90 |
actgctgcagatggattattattattattcaactctgatctcttgctatgatctcctactgatgctataaaacatcatcatgacacttttagtttaaaca |
189 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40220499 |
actgttgcagatgaattattattattattcaactctgatctcttgctatgatctcctactgatgctataaaacatcatcatgacacttttagtttacaca |
40220400 |
T |
|
| Q |
190 |
tacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgatattgtgaaaataaatcattgccaccatgaa |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40220399 |
tacatacatatagtaagtgtaaataagaagagaaaagagtatataccttgctgccgcagattgtgatgatattgtgaaaataaatcattgccaccatgaa |
40220300 |
T |
|
| Q |
290 |
tgcggtttaaggaaggagt |
308 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40220299 |
tgcggtttaaggaaggagt |
40220281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University