View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_3 (Length: 860)
Name: NF2767_low_3
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 4539879 - 4540129
Alignment:
| Q |
20 |
ctgctgtcattataagctcaagctgtatgtatagcctcatttgctcaattctccaaatatccaaccaacactaaactgaccccatctattgtattatttg |
119 |
Q |
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| T |
4539879 |
ctgctgtcattataagctcaagctgtatgtatagcctcatttgctcaattctccaaatatccaaccaacactaaactgaccccatctattgtattatttg |
4539978 |
T |
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| Q |
120 |
tcggtcgtgatttccacacataaaaacttttccttttgtgattggttaggtactgacaaaattttattttctatcaattaattttgattataaagaagtc |
219 |
Q |
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| T |
4539979 |
tcggtcgtgatttccacacataaaaacttttccttttgtgaatggttaggtactgacaaaattttattttctatcaattaattttgatcataaagaagtc |
4540078 |
T |
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| Q |
220 |
aaatataaattgatttatatttcgatacaattatgtgtaagcgtatgtttg |
270 |
Q |
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| T |
4540079 |
aaatataaattgatttatatttcgatacaattatgtgcaagcgtatgtttg |
4540129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 627 - 850
Target Start/End: Original strand, 4540708 - 4540931
Alignment:
| Q |
627 |
cttctcatattttggctctacccttcacttcttcaggaccttctctctggtatgtaattgtcaaactcctagatgcatttttgtttctttttgcttcatt |
726 |
Q |
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| T |
4540708 |
cttctcatattttggctctacccttcacttcttcaggaccttctctctggtatgtaattgtcaaactcctagatgcatttttgtttctttttgcttcatt |
4540807 |
T |
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| Q |
727 |
ttggagtgacacacacttgcttctagatttttggttggtgtcagaatttcatggattttgtttctcactatcttgctctatttgctacttgcaaattgag |
826 |
Q |
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| T |
4540808 |
ttggagtgacacatacttgcttctagattttgggttggtgtcagaatttaatggattttgtttctcactatcttgctctatttgctacttgcaaattgag |
4540907 |
T |
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| Q |
827 |
catacttatttgttgttatctgtg |
850 |
Q |
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| T |
4540908 |
catacttatttgttgttatctgtg |
4540931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 330 - 532
Target Start/End: Original strand, 4540414 - 4540614
Alignment:
| Q |
330 |
caattatgagacataatcaattctactttgagattaatcaaacatgtttaaactagtgttacacctttaaaataaaatcaaagctacatttattggaaaa |
429 |
Q |
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| T |
4540414 |
caattatgagacagaatcaattctactt-gagattaatgaaacatgtttaaattagtgttacacctttaaaataaaatgaaagatacatttattggaaaa |
4540512 |
T |
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| Q |
430 |
ttagaattgtttaattgtttttctttgtcactcaccttctgcattaatatatgagagaaataaagctggtaatgggccatggcaatccacattccccacc |
529 |
Q |
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| T |
4540513 |
ttggaattgtttaattgtttttctt-gtcactcaccttctgcattaatatatgagagaaataaagctggtaatgggccatggcaatccacattccccacc |
4540611 |
T |
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| Q |
530 |
cac |
532 |
Q |
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| T |
4540612 |
cac |
4540614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 4540342 - 4540383
Alignment:
| Q |
272 |
atccaacttctccacctttaaaacgtgtgaactctatacatt |
313 |
Q |
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| T |
4540342 |
atccgacttctccacctttaaaacgagtgaactccatacatt |
4540383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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