View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_35 (Length: 291)
Name: NF2767_low_35
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 31200064 - 31200326
Alignment:
| Q |
16 |
atgaaaatgattccattatgatgagagaaatgaaacttttgagtttaactttcttttatggataacaaaatggtcgaaatacaactataagaaaagactg |
115 |
Q |
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| T |
31200064 |
atgaaaatgattccattatgatgagagaaatgaaacttttgagtttaactttcttttatggataacaaaatggtcgaaatacaactataagaaaagactg |
31200163 |
T |
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| Q |
116 |
aagcttaatcaagcatggagtacaactagcaactccatcctataaaaacgg---tataaagtgatttgattgtacgtgtgtttaaacaacnnnnnnnnnt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | |
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| T |
31200164 |
aagcttaatcaagcatggagtacaactagcaactccatcctataaaaacggcactataaagtgatttgattgtacgcgtgtttaaacaaaaaaaaaatat |
31200263 |
T |
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| Q |
213 |
tacattttcggtgcat---ataaactaaatctttatttatctcgattacgatggaccacatgg |
272 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31200264 |
tacattttcggtgcatataataaactaaatctttatttatctcgattatgatggaccacatgg |
31200326 |
T |
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