View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_39 (Length: 280)
Name: NF2767_low_39
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 38093125 - 38092879
Alignment:
| Q |
13 |
aatatattcaaggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaattgtccgaagga |
112 |
Q |
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| T |
38093125 |
aatatattcaaggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaattgtccgaagga |
38093026 |
T |
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| Q |
113 |
atcccattgtttccttttt-ccaatatttctcattcaagaaaacaacatatagggtttctttccttctgcaccctttgagtcaattctgcatgctttgtt |
211 |
Q |
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| T |
38093025 |
atcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggtttcttg-----tgcaccctttgagtcaattctgcatgctttgtt |
38092931 |
T |
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| Q |
212 |
gtctccattagccttgaccccaacagttcatgtacataactttctgaagaga |
263 |
Q |
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| T |
38092930 |
gtctccattagccctgaccccaacagttcatgtacataactttctgaagaga |
38092879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 38089937 - 38089893
Alignment:
| Q |
219 |
ttagccttgaccccaacagttcatgtacataactttctgaagaga |
263 |
Q |
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| T |
38089937 |
ttagccttgaccccaacaattcatgtacataactttctggagaga |
38089893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 38096191 - 38096147
Alignment:
| Q |
219 |
ttagccttgaccccaacagttcatgtacataactttctgaagaga |
263 |
Q |
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| T |
38096191 |
ttagccttgaccccagcaattcatgtacataactttccgaagaga |
38096147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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