View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_4 (Length: 698)
Name: NF2767_low_4
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 11 - 605
Target Start/End: Original strand, 8509389 - 8509984
Alignment:
| Q |
11 |
ctgagatgaagaatttaaacacatccaatttcagttacttacattttaggtcacatgttaagtgagtgagataggaaagaagcaaaactaatgcatgaaa |
110 |
Q |
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| T |
8509389 |
ctgagatgaagaatttaaacacatccaatttcagttacttacattttaggtcacatgttaagtgagtgagataggaaagaagcaaaactaatgcatgaaa |
8509488 |
T |
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| Q |
111 |
a-aatttggtggctaattttcatacttttcccttaacttgatgatggccacttctcaaaatgctttgtttatttggagggattattcttcaagtcaatta |
209 |
Q |
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| T |
8509489 |
aaaatttggtggctaattttcatacttttcccttaacatgatgatggccacttctcaaaatgctttgtttatttggagggattattcttcaagtcaatta |
8509588 |
T |
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| Q |
210 |
acttcttagagggaaaaagaaagagaatctagcttaccttgaattgtaattgaaagggatgtgacataaaatatatagcatgcataattaataaacttat |
309 |
Q |
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| T |
8509589 |
acttcttagagggaaaaagaaagagaatctagcttaccttgaattgtaattgaaagggatgtgacataaaatatatagcatgcataattaataaacttat |
8509688 |
T |
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| Q |
310 |
aaaagtatgtatacatacatgtgaagtttgctagtgcatttcgtaatgcaataaaattttgcacttttaggataacctattcatgtctcaatcattctac |
409 |
Q |
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| T |
8509689 |
aaaagtatgtatacatacatgtgaagtttgctagtgcatttcgtaatgcaataaaattttgcacttttaggataacctattcatgtctcaatcattctac |
8509788 |
T |
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| Q |
410 |
tcttgatacatcccttacattcatctttacaaattactcacatgctaattgaatagaactatactttaccnnnnnnnttaaaattggatagaagtagaac |
509 |
Q |
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| T |
8509789 |
tcttgatacatcccttacattcatctttacaaattactcacatgctaattgaatagaactatactttaccaaaaaaattaaaattggatagaagtagaac |
8509888 |
T |
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| Q |
510 |
tatagaagaacactagcaactatcaaatttgtaaaataactatgaaatataccccacaccctattccaccctgcaaaatccctttgcatatcatga |
605 |
Q |
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| T |
8509889 |
tatagaagaacactagcaactatcaaatttgtaaaataactatgaaatataccccacaccctattccaccctgcaaaatccctttgcatatcatga |
8509984 |
T |
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