View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_low_40 (Length: 275)

Name: NF2767_low_40
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_low_40
NF2767_low_40
[»] chr5 (1 HSPs)
chr5 (16-261)||(2688296-2688541)
[»] chr7 (3 HSPs)
chr7 (26-257)||(22196949-22197181)
chr7 (26-257)||(22240640-22240872)
chr7 (26-235)||(39844907-39845117)
[»] chr3 (5 HSPs)
chr3 (41-257)||(42773777-42773994)
chr3 (144-200)||(44656976-44657032)
chr3 (42-197)||(52612844-52613000)
chr3 (142-190)||(55167506-55167554)
chr3 (140-245)||(1547621-1547726)
[»] chr6 (4 HSPs)
chr6 (32-245)||(20794306-20794519)
chr6 (26-259)||(14459316-14459550)
chr6 (143-190)||(33113403-33113450)
chr6 (147-203)||(2030995-2031051)
[»] chr1 (2 HSPs)
chr1 (142-190)||(38548074-38548122)
chr1 (142-184)||(12172359-12172401)
[»] chr8 (3 HSPs)
chr8 (142-203)||(10124218-10124279)
chr8 (92-172)||(27220312-27220393)
chr8 (147-203)||(5201285-5201341)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 2688296 - 2688541
Alignment:
Q  16 cactgcctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagcca 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2688296 cactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagcca 2688395  T
Q  116 ttccggattttctcatttagtggtccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagt 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2688396 ttccggattttcttatttagtggtccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcgaagt 2688495  T
Q  216 caaccaaacgttccgagccaaatcacaatggagaaaaagatgagag 261  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  2688496 caaccaaacattccgagccaaatcacaatggagaaaaagatgagag 2688541  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 22197181 - 22196949
Alignment:
Q  26 tcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattt 125  Q
    ||||| |||||| |||||||||||||||| |  ||||||||||| |||||||  ||||||| | |||||||||||||||| || || || ||||| | ||    
T  22197181 tcccatctagcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcattcgtaacccgttccgaactt 22197082  T
Q  126 tctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaac 224  Q
    ||| | | |  || |||| ||||||||||| ||||||||| || | ||| || ||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  22197081 tcttaataaaaggacccccactccaacacttccaatggataaaaaggttcggaggcattataaaattcaaatccaaacaagacatcaaactcaaccaaac 22196982  T
Q  225 gttccgagccaaatcacaatggagaaaaagatg 257  Q
     ||||| |||||||||||||| || ||||||||    
T  22196981 attccgggccaaatcacaatgaaggaaaagatg 22196949  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 22240640 - 22240872
Alignment:
Q  26 tcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattt 125  Q
    ||||| |||||| |||||||||||||||| |  ||||||||||| |||||||  ||||||| | |||||||||||||||| || || || ||||| | ||    
T  22240640 tcccatctagcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcattcgtaacccgttccgaactt 22240739  T
Q  126 tctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaac 224  Q
    ||| | | |  || |||| ||||||||||| ||||||||| || | ||| || ||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  22240740 tcttaataaaaggacccccactccaacacttccaatggataaaaaggttcggaggcattataaaattcaaatccaaacaagacatcaaactcaaccaaac 22240839  T
Q  225 gttccgagccaaatcacaatggagaaaaagatg 257  Q
     ||||| |||||||||||||| || ||||||||    
T  22240840 attccgggccaaatcacaatgaaggaaaagatg 22240872  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 39845117 - 39844907
Alignment:
Q  26 tcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattt 125  Q
    |||||||| |||||  ||||||||||||| |  |||||||| || |||||||  |||||||  ||  ||||||| ||||| ||||| || ||||| ||||    
T  39845117 tcccacctcgcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattt 39845018  T
Q  126 tctcatttagtggt-ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaac 224  Q
    ||| ||| |  | | ||||||||||||| |||||||| || | ||| || || ||||||| ||||| |||||| |||||  |||||| | ||||||||||    
T  39845017 tcttattaatagatcccccactccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaac 39844918  T
Q  225 gttccgagcca 235  Q
     |||| |||||    
T  39844917 attcctagcca 39844907  T

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Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 41 - 257
Target Start/End: Original strand, 42773777 - 42773994
Alignment:
Q  41 acattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcatttagtggt- 139  Q
    ||||| || |||||||| ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||| ||||| |||| |||||  || || | |     
T  42773777 acattgttgaaaatgcactcatttctagccttccaaattacccaaatcacggcctcccaaatcatacgcaaaccattacggactttcttcttaagagatc 42773876  T
Q  140 ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccgagccaaatc 239  Q
    |||||||||||||||||||||| || || | |||||| ||||| | ||||||||| |||||||||||||||||| |||||||||  ||||  ||||||||    
T  42773877 ccccactccaacactcccaatgaataaagaggtttggaggcataacaaaatgcaagtccaaccaagacatcaaactcaaccaaatattccacgccaaatc 42773976  T
Q  240 acaatggagaaaaagatg 257  Q
     ||||| ||||| |||||    
T  42773977 gcaatgaagaaagagatg 42773994  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 44656976 - 44657032
Alignment:
Q  144 actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaa 200  Q
    |||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||    
T  44656976 actccagcactcccaatgaataaataaatttgggggcattataaaattcaaatccaa 44657032  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 52612844 - 52613000
Alignment:
Q  42 cattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcatttagtggtcc 141  Q
    ||||||| ||||| | |||||| || || ||||| || ||||||| |||  ||||||||||||||| ||| || ||||| || |||| || ||    |||    
T  52612844 cattattgaaaatacgatcattcctcgctttccacaaaacccaaatcaccacctcccaaatcatcctcaatcccttccgaatcttcttatgtatcaatcc 52612943  T
Q  142 cc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatc 197  Q
    || |||||||||||||||||| || || || ||||| ||||||||||||| ||||||    
T  52612944 cccactccaacactcccaatgaattaacaaatttggcggcattataaaattcaaatc 52613000  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 55167506 - 55167554
Alignment:
Q  142 ccactccaacactcccaatggatgaataagtttgggggcattataaaat 190  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  55167506 ccactccaacactcccaatggataaataaatttggaggcattataaaat 55167554  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 1547726 - 1547621
Alignment:
Q  140 ccccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccgagccaaatc 239  Q
    ||||||||||||| |||||||| || | ||| || || ||||||| ||||| |||||| |||||  |||||| | |||||||||| |||| |||||  ||    
T  1547726 ccccactccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtc 1547627  T
Q  240 acaatg 245  Q
    ||||||    
T  1547626 acaatg 1547621  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 245
Target Start/End: Complemental strand, 20794519 - 20794306
Alignment:
Q  32 ctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcat 131  Q
    |||||| || ||||||||||| |||| ||||||||||| |||||||  ||||||| | || ||||| |||||||||||||  | ||||| | ||||| ||    
T  20794519 ctagcaatagcattattaaaattgcactcatttctagccttccaaatcacccaaatcccgacctcc-aaatcatccgcaactcgttccgaactttcttat 20794421  T
Q  132 ttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaacgttccg 230  Q
      |  || |||| ||||||||||||||||||||| || | ||| |  ||||||||||||| |||||||||||||||||||||| |||||||||| |||||    
T  20794420 gaaaaggacccccactccaacactcccaatggataaaaaggttcgaaggcattataaaattcaaatccaaccaagacatcaaactcaaccaaacattccg 20794321  T
Q  231 agccaaatcacaatg 245  Q
     ||||||||||||||    
T  20794320 ggccaaatcacaatg 20794306  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 259
Target Start/End: Complemental strand, 14459550 - 14459316
Alignment:
Q  26 tcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattt 125  Q
    |||||||||||| |  |||||||||||||||  ||||| |||||   |||||  ||||||||| |  ||||||| |||||||||||||| ||||| || |    
T  14459550 tcccacctagcaatcccattattaaaaatgccctcattcctagcgcgccaaattacccaaaccgctacctcccatatcatccgcaagcccttccgaatct 14459451  T
Q  126 tctcatttagtggtcccc-actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaagacatcaaagtcaaccaaac 224  Q
    ||| ||  | || |||||  |||||||| ||||||||||| || || || || ||||| | ||||| |||||| ||||||| |||||||   ||||| ||    
T  14459450 tcttatgaattgatcccctgctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaagtcatcaaatgtaaccacac 14459351  T
Q  225 gttccgagccaaatcacaatggagaaaaagatgag 259  Q
     |||   ||||| || ||||| |||||||||||||    
T  14459350 attctttgccaagtcgcaatgaagaaaaagatgag 14459316  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 33113403 - 33113450
Alignment:
Q  143 cactccaacactcccaatggatgaataagtttgggggcattataaaat 190  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  33113403 cactccaacactcccaatggataaataaatttggaggcattataaaat 33113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 2030995 - 2031051
Alignment:
Q  147 ccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 203  Q
    |||||||||||||||||| ||||| || || ||||||| ||||| ||||||||||||    
T  2030995 ccaacactcccaatggataaataaattgggtggcattacaaaattcaaatccaacca 2031051  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 38548122 - 38548074
Alignment:
Q  142 ccactccaacactcccaatggatgaataagtttgggggcattataaaat 190  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  38548122 ccactccaacactcccaatggataaataaatttggaggcattataaaat 38548074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 12172401 - 12172359
Alignment:
Q  142 ccactccaacactcccaatggatgaataagtttgggggcatta 184  Q
    ||||||||||||||||||||||| || |||||||| |||||||    
T  12172401 ccactccaacactcccaatggataaacaagtttggaggcatta 12172359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 10124279 - 10124218
Alignment:
Q  142 ccactccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 203  Q
    |||||||||||||||||||| || |  |||||||| ||||||||||||| ||||| ||||||    
T  10124279 ccactccaacactcccaatgaataaccaagtttggaggcattataaaattcaaattcaacca 10124218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 27220393 - 27220312
Alignment:
Q  92 gcctcccaaatcatccgcaagccattccggattttctcatttagtggtcc-ccactccaacactcccaatggatgaataagt 172  Q
    |||||||| ||||| ||||| || ||||||||||||| ||| |  || || ||||||||||||||||||||||| |||||||    
T  27220393 gcctcccatatcatacgcaaacccttccggattttcttattgatcgggcctccactccaacactcccaatggataaataagt 27220312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 5201285 - 5201341
Alignment:
Q  147 ccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaacca 203  Q
    |||||| |||||||||| ||||||||| || ||||||| ||||| ||||||||||||    
T  5201285 ccaacattcccaatggacgaataagttgggtggcattacaaaattcaaatccaacca 5201341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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