View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_41 (Length: 270)
Name: NF2767_low_41
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 36953469 - 36953709
Alignment:
| Q |
18 |
cattcaagggacaaacatgaaaggcttcctcttcattatgcagcatctgtaggttaccttgaaggcgttgatttattacttggaatatgtgaatgttgca |
117 |
Q |
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||||||| |||||||||||||| ||||||||||||||| ||| | || ||||||||||||||||||||| | |||| ||| ||| ||| ||||||||| |
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| T |
36953469 |
cattcaatggacaaacatgaaatgcttcctcttcattacgcatcgactataggttaccttgaaggcgttgttcaattaattgaaatgtgtaaatgttgca |
36953568 |
T |
|
| Q |
118 |
ccattcaaagggacaaatatggttatttcccaattcatctagcatcatatggtggccatgtggaagtagtgaagaagttgttagaatattgtcctgatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36953569 |
ccattcaaagggacaaatatggttatttcccaattcatctagcatcgtatggtggccatgtggaagtagtgaagaagttgttggaatattgtcctgatcc |
36953668 |
T |
|
| Q |
218 |
cacagagatgcttgacacttctcatgaacgtaatattcttc |
258 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36953669 |
cacagagatgcttgacacttctcatgagcgtaatattcttc |
36953709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 36947035 - 36947275
Alignment:
| Q |
18 |
cattcaagggacaaacatgaaaggcttcctcttcattatgcagcatctgtaggttaccttgaaggcgttgatttattacttggaatatgtgaatgttgca |
117 |
Q |
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|||| |||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| | ||| |||| |||| |
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| T |
36947035 |
catttaagggacaaagatggaaggcttcctcttcattacgcagcatctataggttaccttgaaggtgtttatttattacttggcacatgcaaatgctgca |
36947134 |
T |
|
| Q |
118 |
ccattcaaagggacaaatatggttatttcccaattcatctagcatcatatggtggccatgtggaagtagtgaagaagttgttagaatattgtcctgatcc |
217 |
Q |
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| T |
36947135 |
caattcaaagggacaataatggttatttcccaattcatctagcatcttatggtggccatgtggaagtagtgaagaagttgttggaatattgtcctgatcc |
36947234 |
T |
|
| Q |
218 |
cacagagatgcttgacacttctcatgaacgtaatattcttc |
258 |
Q |
| |
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|| ||||||||| ||||||| || | ||| |||||||||| |
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| T |
36947235 |
cagagagatgctcgacacttttcttcaacaaaatattcttc |
36947275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 37070972 - 37070751
Alignment:
| Q |
17 |
acattcaagggacaaacatgaaaggcttcctcttcattatgcagcatctgtaggttaccttgaaggcgttgatttattacttggaatatgtgaatgttgc |
116 |
Q |
| |
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|||||||| ||||| | ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||| |||||||| |
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| T |
37070972 |
acattcaacggacacatatgaaaggcttccacttcattatgcagcatctataggttaccttaaaggcgttgaattattacttggcatatgtaaatgttgc |
37070873 |
T |
|
| Q |
117 |
accattcaaagggacaaatatggttatttcccaattcatctagcatcatatggtggccatgtggaagtagtgaagaagttgttagaatattgtcctgatc |
216 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||||||||||||||| |||| ||||| || |||| || ||||||||||||||||| ||||| |||| |
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| T |
37070872 |
accaatcaaagggacaaatatggctatttctcaattcatctagcatctcatggaggccacttgaaagtggtaaagaagttgttagaatactgtccagatc |
37070773 |
T |
|
| Q |
217 |
ccacagagatgcttgacacttc |
238 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
37070772 |
ccactgagatgcttgacacttc |
37070751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 37080785 - 37080584
Alignment:
| Q |
37 |
aaaggcttcctcttcattatgcagcatctgtaggttaccttgaaggcgttgatttattacttggaatatgtgaatgttgcaccattcaaagggacaaata |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| ||| |||| || ||| ||| | |||| |||||||||||| ||||||||||||||| |
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| T |
37080785 |
aaaggcttccacttcattatgcagcatctataggttaccttgtaggtgttgtttatttaactggcaaatgtaaatgttgcaccaatcaaagggacaaata |
37080686 |
T |
|
| Q |
137 |
tggttatttcccaattcatctagcatcatatggtggccatgtggaagtagtgaagaagttgttagaatattgtcctgatcccacagagatgcttgacact |
236 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
37080685 |
tggctatttcccaattcatctagcatcatatggtggccatgtggaagtagtagagaagttgttagaatactgtccagatcccacagagatgcttgacact |
37080586 |
T |
|
| Q |
237 |
tc |
238 |
Q |
| |
|
|| |
|
|
| T |
37080585 |
tc |
37080584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 36964596 - 36964757
Alignment:
| Q |
18 |
cattcaagggacaaacatgaaaggcttcctcttcattatgcagcatctgtaggttaccttgaaggcgttgatttattacttggaatatgtgaatgttgca |
117 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||| |||| |||| |||||||||||||||| ||||| ||||||||||| ||||| |||| |||| |
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| T |
36964596 |
catttaagggacaaacatggaagacttcctcttcattacgcagtatctataggttaccttgaaggtgttgaattattacttggcatatgcaaatgctgca |
36964695 |
T |
|
| Q |
118 |
ccattcaaag---ggacaaatatggttatttcccaattcatctagcatcatatggtggccat |
176 |
Q |
| |
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| |||||||| |||| |||||| | ||| ||||||||| ||||||| | |||||||||| |
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|
| T |
36964696 |
caattcaaagtgatgacatatatggctcttttccaattcatttagcatcttctggtggccat |
36964757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 12494777 - 12494537
Alignment:
| Q |
18 |
cattcaagggacaaacatgaaaggcttcctcttcattatgcagcatctgtaggttaccttgaaggcgttgatttattacttggaatatgtgaatgttgca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||| |||||| ||| | ||| |||| |||| |
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| T |
12494777 |
cattcaagggacaaacatgaaaggcttccacttcattacgcagcatctataggttaccttgaaggtgttgaattattaattgacaaatgcaaatgctgca |
12494678 |
T |
|
| Q |
118 |
ccattcaaagggacaaatatggttatttcccaattcatctagcatcatatggtggccatgtggaagtagtgaagaagttgttagaatattgtcctgatcc |
217 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12494677 |
caattcaaagggacaaattatgttatttcccaattcatgtagcatcatatggtggccatgtggaagtagtgaaaaagttgttagaatattgtcctgatcc |
12494578 |
T |
|
| Q |
218 |
cacagagatgcttgacacttctcatgaacgtaatattcttc |
258 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
12494577 |
cacagagatgcttgacacttctcataaacgtaatattcttc |
12494537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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