View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_44 (Length: 263)
Name: NF2767_low_44
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_44 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 206234 - 206474
Alignment:
| Q |
11 |
cacagatacatccaaataatttctctcattctagaaccatccgccatatctccataaacccttctttcactccctttcatcttccattccaaaagggttt |
110 |
Q |
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| T |
206234 |
cacaaatacatccaaataatttttctcattctagaaccatccgccatatctccataaacccttctttcactcactttcatcttccattccaaaagggttt |
206333 |
T |
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| Q |
111 |
ttc-----atttcactttccactctctctaagaagataacgttaaacacctcagtcattcaacaatggctcccgtgcttagcagaagcttagccgccact |
205 |
Q |
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| T |
206334 |
ttcatttcatttcactttccactctctcttaaaagataacgttaaacacctcactcattcaacaatggctcctgtgcttagcagaagcttagctgccact |
206433 |
T |
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| Q |
206 |
gcctccctcacttccctcccttcttcctcctccttttcact |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
206434 |
gcctccctcacttccctcccttcttcctcctccttttcact |
206474 |
T |
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