View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_47 (Length: 258)
Name: NF2767_low_47
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 32385546 - 32385314
Alignment:
| Q |
9 |
actctttgttgaactatttcatttcatcaccatcatcttggagtaagaaactataattgcaaggaatatgatattaggaagnnnnnnn-tacaatttttg |
107 |
Q |
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| T |
32385546 |
actctttgttgaactatttcatttcatcatcatcgttttcgagtaagaaactataattgcaaggaatatgatattaggaagaaaaaaaatacaatttttg |
32385447 |
T |
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| Q |
108 |
gatgctagcacaataactaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttttgctagcacaataactcgttcttctctactg |
207 |
Q |
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| T |
32385446 |
gatgctagcacaataactaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttttgctagcacaataactcgttcttctctactg |
32385347 |
T |
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| Q |
208 |
atcattttgtactctctcgagtcgtacacatag |
240 |
Q |
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| T |
32385346 |
atcattttgtactctctcgagtcgtacacatag |
32385314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 32393069 - 32392916
Alignment:
| Q |
23 |
tatttcatttcatcaccatcatcttggagtaagaaactataattgcaaggaatatgatattaggaagnnnnnnntacaatttttggatgctagcacaata |
122 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| |
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| T |
32393069 |
tatttcatttcttcaccatcatcttagagtaagaaactataattgcaaggaatatgatattaggacaaaaaaaatacaacttttggacgctaacacaata |
32392970 |
T |
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| Q |
123 |
actaaatgacatctcttggaatatttcaacttaaggtatattgatcagtacttt |
176 |
Q |
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||||| |||||||||| |||||||||| ||||| ||||||| | ||||||| |
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| T |
32392969 |
actaagcaacatctcttgaaatatttcaatttaagacatattgaacggtacttt |
32392916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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