View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2767_low_5 (Length: 634)

Name: NF2767_low_5
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2767_low_5
NF2767_low_5
[»] chr2 (6 HSPs)
chr2 (10-618)||(9258371-9258979)
chr2 (10-618)||(9268379-9268974)
chr2 (200-618)||(9237969-9238387)
chr2 (305-618)||(9250592-9250905)
chr2 (16-146)||(9250306-9250436)
chr2 (16-148)||(9237782-9237914)


Alignment Details
Target: chr2 (Bit Score: 593; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 10 - 618
Target Start/End: Original strand, 9258371 - 9258979
Alignment:
Q  10 agatgaaaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258371 agatgaaaaactatcccggcaaaaaacatacagaggatcatcatacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa 9258470  T
Q  110 acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatataaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9258471 acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcataccgtgacatataaa 9258570  T
Q  210 gagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataattctcgaagc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258571 gagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataattctcgaagc 9258670  T
Q  310 atcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcgacca 409  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258671 accaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcgacca 9258770  T
Q  410 accaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258771 accaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcg 9258870  T
Q  510 gaattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggac 609  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9258871 gaattctggttttagacgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcggac 9258970  T
Q  610 gaagaattg 618  Q
    |||||||||    
T  9258971 gaagaattg 9258979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 618
Target Start/End: Original strand, 9268379 - 9268974
Alignment:
Q  10 agatgaaaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa 109  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  9268379 agatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaactccaataacacttcaaggtaa 9268478  T
Q  110 acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatataaa 209  Q
    |||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||| |||| ||||| || | ||||||||||            ||    
T  9268479 acaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgcccatttgcata------------aa 9268566  T
Q  210 gagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataattctcgaagc 309  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||| |||||||    
T  9268567 gatctaccaacagtgaaggaatttccataaacatggaaacagaaaaatattcagaatcattgatgtaatttgtaaagcaatcatcaataattgtcgaagc 9268666  T
Q  310 atcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagcgacca 409  Q
    | |||||||| ||| |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||| || |||    
T  9268667 accaatcaccgatttacctgtacaaagcctgagaatcaaagaaacaatataatgtttggctttccacactttaggacaaactatactcctcaatcgtcca 9268766  T
Q  410 accaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttgaatcg 509  Q
    |||||||| ||||||||||||||||||||||| |||||||  ||||||| ||||||   |||||||||| ||||||| |||||||||||||||| |||||    
T  9268767 accaattggagatttgcatcgttttcgatgccacattcgcgaagactctattctagctgaagctgttttgcttcgtatattaatcgttgatgttcaatcg 9268866  T
Q  510 gaattctggttttagatgaaatttgttcgagaagcgattcaac--tgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatgcgg 607  Q
    ||||| |||||||  ||||||||||||||||||| ||||||||  | ||||||| |||||||||||||||||||||||||||| ||||||   |||||||    
T  9268867 gaattttggttttgaatgaaatttgttcgagaagggattcaacttttttttttcgctagaagcacgaatcactaaggtgttactgttcca---catgcgg 9268963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 200 - 618
Target Start/End: Original strand, 9237969 - 9238387
Alignment:
Q  200 gacatataaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggtgatcatcaataa 299  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||| |||||| | ||||||||||| ||| ||| || || | || || ||||| || |||||    
T  9237969 gacatataaagtgctaccaacagagaaggaattttcattaacttgaaaaaataaaaatattcaaaattattcatatactttgcaaagtgattatgaataa 9238068  T
Q  300 ttctcgaagcatcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcct 399  Q
    |  | || ||| || ||| | |||| |||||||||||  |||||||||  ||||||||||  | ||  |  |||||||||  || || | ||||||||||    
T  9238069 tcatggaggcaccattcagcgattcgcctctacagaggttgagaatcattgaaacaatatcatctgcagaattccacactacagaacgccctatactcct 9238168  T
Q  400 caagcgaccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttga 499  Q
    |||  ||||||||||||||||||| || ||||||||||||||||||| || ||||||||||| | |   |||||||||||| | ||| || |||||||||    
T  9238169 caattgaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttga 9238268  T
Q  500 tgttgaatcggaattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccaca 599  Q
    | || ||| |||||| ||||||| ||||||||||||| |||||  ||||| ||||| | |||||| |||||  |||| |||| ||||||||| |||||||    
T  9238269 tattcaataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttccaca 9238368  T
Q  600 tcatgcggacgaagaattg 618  Q
    ||||||| || ||||||||    
T  9238369 tcatgcgaacaaagaattg 9238387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 305 - 618
Target Start/End: Original strand, 9250592 - 9250905
Alignment:
Q  305 gaagcatcaatcaccaattcacctctacagagcctgagaatcaaagaaacaatatattgtgtggctttccacactttaggacacgctatactcctcaagc 404  Q
    |||||| |||||||   |||||||||||||||  |||||||||  ||||||||||  | ||| |  |||||||||  || || | |||||||||||||      
T  9250592 gaagcaccaatcactggttcacctctacagagtttgagaatcattgaaacaatatcatctgtagaattccacactacagaacgcactatactcctcaatt 9250691  T
Q  405 gaccaaccaattgaagatttgcatcgttttcgatgccgcattcgcagagactctgttctagagtaagctgttttccttcgtaaattaatcgttgatgttg 504  Q
    ||||||||||||||||||| || ||||||||||||||||||| || ||||||||||| | |   |||||||||||| | ||| || |||||||||| ||     
T  9250692 gaccaaccaattgaagattggcgtcgttttcgatgccgcattggctgagactctgttgttgctgaagctgttttccattgtagatcaatcgttgatattc 9250791  T
Q  505 aatcggaattctggttttagatgaaatttgttcgagaagcgattcaactgttttttctctagaagcacgaatcactaaggtgttacagttccacatcatg 604  Q
    ||| |||||| ||||||| ||||||||||||| |||||  ||||| ||||| | |||||| |||||  |||| |||| ||||||||| ||||||||||||    
T  9250792 aataggaattttggttttggatgaaatttgttggagaatagattccactgtgtcttctcttgaagcgtgaatgactatggtgttacatttccacatcatg 9250891  T
Q  605 cggacgaagaattg 618  Q
    || || ||||||||    
T  9250892 cgaacaaagaattg 9250905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 9250306 - 9250436
Alignment:
Q  16 aaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaaacaccc 115  Q
    ||||| |||||| ||| ||||||||| ||||| |||  ||||||||| | ||| ||||||||||||||||||||||||  ||||||| |||||| ||| |    
T  9250306 aaaaccatcccgacaacaaacatacaaaggatgatcacacttacaccctacccctctaagcaattcacaaaactccaacaacacttctaggtaagcactc 9250405  T
Q  116 tgcaactttttgtccttcaaatctaaacaaa 146  Q
    |||||| |||||  |||||||||||||||||    
T  9250406 tgcaacgttttgcacttcaaatctaaacaaa 9250436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 9237782 - 9237914
Alignment:
Q  16 aaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaaacaccc 115  Q
    ||||| |||||| ||| ||||||||| ||| |||||  || || | | | ||| |||||||||||||||||| |||||  | | ||||||||| | ||||    
T  9237782 aaaaccatcccgacaagaaacatacaaaggctcatcacacgtaaaacctacccctctaagcaattcacaaaaatccaacaaaatttcaaggtagaaaccc 9237881  T
Q  116 tgcaactttttgtccttcaaatctaaacaaatt 148  Q
    ||||||||||||  |||||||||||||||||||    
T  9237882 tgcaactttttgcacttcaaatctaaacaaatt 9237914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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