View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_53 (Length: 233)
Name: NF2767_low_53
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 25708512 - 25708714
Alignment:
| Q |
14 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgtagttcaaagctcatac |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25708512 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgaagttcaaagctcatac |
25708611 |
T |
|
| Q |
114 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25708612 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcc |
25708711 |
T |
|
| Q |
214 |
ttt |
216 |
Q |
| |
|
||| |
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|
| T |
25708712 |
ttt |
25708714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 31475957 - 31475755
Alignment:
| Q |
14 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgtagttcaaagctcatac |
113 |
Q |
| |
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||||||||||||||| |||| | |||||||| || || | |||||||||||| ||| ||||| || || ||| |||| ||||||||||||||| |
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| T |
31475957 |
agataattctttacactgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatac |
31475858 |
T |
|
| Q |
114 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcc |
213 |
Q |
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|| ||||| || ||||| ||||||| || ||||| ||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |
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| T |
31475857 |
agcttttttagtattgacaatcacctctgtctattcattttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcc |
31475758 |
T |
|
| Q |
214 |
ttt |
216 |
Q |
| |
|
||| |
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|
| T |
31475757 |
ttt |
31475755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 40843339 - 40843137
Alignment:
| Q |
14 |
agataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtctgtagttcaaagctcatac |
113 |
Q |
| |
|
||||||||||||||| |||| | |||||||| || || | |||||||||||| ||| ||||| || || ||| |||| ||||||||||||||| |
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| T |
40843339 |
agataattctttacactgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtcttcggttcaaagctcatac |
40843240 |
T |
|
| Q |
114 |
cgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcc |
213 |
Q |
| |
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|| ||||| || ||||| ||||||| || ||||| ||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |
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| T |
40843239 |
agcttttttagtattgacaatcacctctgtctattcgttttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcc |
40843140 |
T |
|
| Q |
214 |
ttt |
216 |
Q |
| |
|
||| |
|
|
| T |
40843139 |
ttt |
40843137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 31407353 - 31407236
Alignment:
| Q |
99 |
gttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctc |
198 |
Q |
| |
|
||||||||||||||| || ||||| || ||||| ||||||| || ||||| ||| | | ||||||||||||||||| ||||||||||| |||||| | |
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|
| T |
31407353 |
gttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcttg |
31407254 |
T |
|
| Q |
199 |
atttcatgtgctgccttt |
216 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
31407253 |
atttcatgtgccgccttt |
31407236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 31284877 - 31284995
Alignment:
| Q |
99 |
gttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctc |
198 |
Q |
| |
|
||||||||||||| | || ||||| || ||||| |||||||| | ||||| ||| | | ||||||||| || |||| ||||||||||| ||||||||| |
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|
| T |
31284877 |
gttcaaagctcatgctgcgtttttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctc |
31284976 |
T |
|
| Q |
199 |
atttcatgtgctgcctttt |
217 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
31284977 |
atttcatgtgcttcctttt |
31284995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 31643751 - 31643694
Alignment:
| Q |
159 |
tgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgccttt |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||| |
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|
| T |
31643751 |
tgataaagtggtgaatggaaaaccagatgcatatagcctcatttcttgtgcttccttt |
31643694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 31317519 - 31317635
Alignment:
| Q |
100 |
ttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctca |
199 |
Q |
| |
|
|||||||||||| | || ||| | || ||||| ||||| ||| | ||||| ||| | | ||||||||| |||||| |||||||||||| ||||| | | |
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| T |
31317519 |
ttcaaagctcattcggcatttctggtattgacactcacttcaatctattcctttttctttgataaagtcatgaatgggaaaccagatgcatatagtttaa |
31317618 |
T |
|
| Q |
200 |
tttcatgtgctgccttt |
216 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
31317619 |
tttcatgtgctgccttt |
31317635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 31368794 - 31368849
Alignment:
| Q |
161 |
ataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgccttt |
216 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
31368794 |
ataaagtcatgaatgggaaaccagatgcatatagtctaatttcatgtgctgccttt |
31368849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 31494063 - 31493946
Alignment:
| Q |
99 |
gttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctc |
198 |
Q |
| |
|
||||||||||||||| || ||| | || || || ||||||| || ||||| ||| | | || |||||||||||||| ||||||||||| ||||| || |
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|
| T |
31494063 |
gttcaaagctcatacagcttttctggtattaacaatcacctctgtctattcatttttctttggtaaagtggtgaatggaaaaccagatgcatatagtcta |
31493964 |
T |
|
| Q |
199 |
atttcatgtgctgccttt |
216 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
31493963 |
ataacatgtgctgccttt |
31493946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 31279355 - 31279299
Alignment:
| Q |
160 |
gataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgccttt |
216 |
Q |
| |
|
|||||| || |||||| |||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
31279355 |
gataaattgatgaatgggaaacctgatggatatagcctcatttcatgtgcttccttt |
31279299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 31505754 - 31505710
Alignment:
| Q |
172 |
aatgagaaaccagatgcttatagcctcatttcatgtgctgccttt |
216 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
31505754 |
aatgggaaaccagatgcatatagcctcatttcaagtgcttccttt |
31505710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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