View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_54 (Length: 228)
Name: NF2767_low_54
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 4303438 - 4303244
Alignment:
| Q |
19 |
catagggagcttgaaaaaacatggctccattgtaagtcatatgttgagttgtttcaagtgtagggcgattggaaattgccaagtcaattttggtgaaaca |
118 |
Q |
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| T |
4303438 |
catagggagcttgaaaaaacatggctccattgtaagtcatatgttgagttgtttcaagtgtagggcgatcggaaattgccaagtcaattttggtgaaaca |
4303339 |
T |
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| Q |
119 |
ttcctcagccatttcccaattacttagcaccaaagcatttctggaaccaagtttgattgtgaataaaggtccatatgtgtcagccaatgcaccta |
213 |
Q |
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| T |
4303338 |
ttcctcagccatttcccaattacttagcaccaaagcatttctcgaaccaagtttgattgtgaataaaggtccatatgtgtcagccaatgcaccta |
4303244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 2361660 - 2361482
Alignment:
| Q |
35 |
aaacatggctccattgtaagtcatatgttgagttgtttcaagtgtagggcgattggaaattgccaagtcaattttggtgaaacattcctcagccatttcc |
134 |
Q |
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| T |
2361660 |
aaacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgccaagtcaatttttgtgaaacattcctttgccatttcc |
2361561 |
T |
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| Q |
135 |
caattacttagcaccaaagcatttctggaaccaagtttgattgtgaataaaggtccatatgtgtcagccaatgcaccta |
213 |
Q |
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| T |
2361560 |
caattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatatttatcagccaatgcaccta |
2361482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 2366257 - 2366086
Alignment:
| Q |
42 |
gctccattgtaagtcatatgttgagttgtttcaagtgtagggcgattggaaattgccaagtcaattttggtgaaacattcctcagccatttcccaattac |
141 |
Q |
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| T |
2366257 |
gctccattgtaagtcatatgtttatatgcttcacctttagggcgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgc |
2366158 |
T |
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| Q |
142 |
ttagcaccaaagcatttctggaaccaagtttgattgtgaataaaggtccatatgtgtcagccaatgcaccta |
213 |
Q |
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| T |
2366157 |
taagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcaccta |
2366086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 2355976 - 2355818
Alignment:
| Q |
36 |
aacatggctccattgtaagtcatatgttgagttgtttcaagtgtagggcgattggaaattgccaagtcaattttggtgaaacattcctcagccatttccc |
135 |
Q |
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||||||||||||||||||| || ||||| ||||| ||||| |||| ||| |||||||||| | ||||| ||||||||||||||||| ||||||||| |
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| T |
2355976 |
aacatggctccattgtaagccaaatgttcagttgcaacaagtttaggacgagtggaaattgcaacgtcaaatttggtgaaacattccttcgccatttccg |
2355877 |
T |
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| Q |
136 |
aattacttagcaccaaagcatttctggaaccaagtttgattgtgaataaaggtccatat |
194 |
Q |
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|||| || || |||||||||||| |||||||||||||||| ||||| || ||||||||| |
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| T |
2355876 |
aattgctaagtaccaaagcatttttggaaccaagtttgatggtgaacaagggtccatat |
2355818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 2295225 - 2295124
Alignment:
| Q |
101 |
gtcaattttggtgaaacattcctcagccatttcccaattacttagcaccaaagcatttctggaaccaagtttgattgtgaataaaggtccatatgtgtca |
200 |
Q |
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|||| |||||||||||||||| | || | ||||||||| |||| |||||||||| | | | ||| || ||||||||||||| ||||||||| ||||| |
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| T |
2295225 |
gtcatttttggtgaaacattctttggctaattcccaattgtttagtaccaaagcatgtgtagcacctagcttgattgtgaatatgggtccatatctgtca |
2295126 |
T |
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| Q |
201 |
gc |
202 |
Q |
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|| |
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| T |
2295125 |
gc |
2295124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 41340206 - 41340088
Alignment:
| Q |
35 |
aaacatggctccattgtaagtcatatgttgagttgtttcaagtgtagggcgattggaaattgccaagtcaattttggtgaaacattcctcagccatttcc |
134 |
Q |
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|||||||||||||||||||| || ||||| |||| ||||||| |||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
41340206 |
aaacatggctccattgtaagccaaatgtttagttacttcaagtttagggcgatttgaaactgccaagtcaactttggtaaaacattcctcagccatttcc |
41340107 |
T |
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| Q |
135 |
caattacttagcaccaaag |
153 |
Q |
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||||| || |||||||||| |
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| T |
41340106 |
caattgctaagcaccaaag |
41340088 |
T |
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