View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_56 (Length: 208)
Name: NF2767_low_56
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19751041 - 19751236
Alignment:
| Q |
1 |
tttttgtgtttatcataaaatttagaaaatgttgtaataacaatgatctataattatccaaaatattgccaaactcgtatttgttgtttgatgtatccat |
100 |
Q |
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| T |
19751041 |
tttttgtgtttatcttaaaatttagaaaatgttgtaataacaatgatctataattagccaaaatattgccaaactcgtatttgttgtttgatgtatccat |
19751140 |
T |
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| Q |
101 |
gatgcttccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattccccaagccaagttataccctcccttaatccctatgct |
196 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19751141 |
gatacttccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattccccaagccaagttataccctcccttaatcccaatgct |
19751236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 19596358 - 19596162
Alignment:
| Q |
1 |
tttttgtgtttatcataaaatttagaaaatgttgtaataacaatgatctataattatccaaaatattgccaaactcgtatttgttgtttgatgtatccat |
100 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19596358 |
tttttgtgtttatcttaaagtttagaaaatgttgtaataacagtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccat |
19596259 |
T |
|
| Q |
101 |
gat-gcttccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattccccaagccaagttataccctcccttaatccctatgct |
196 |
Q |
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||| ||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19596258 |
gatggcttccaccactagcttctaatctggctcaatttgcatcatggataatcctaattccccaagccaagttataccctcccttaatcccaatgct |
19596162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 47432247 - 47432361
Alignment:
| Q |
62 |
aatattgccaaactcgtatttgttgtttgatgtatccatgatg-cttccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattcc |
160 |
Q |
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|||||||||||| | ||| |||||| ||| ||||||||||| |||||||||||||||| |||| || | |||||||| || | |||||||| |||| |
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| T |
47432247 |
aatattgccaaaatttgattggttgttagatttatccatgatgtcttccaccactagcttgcaatctagcactatttgcactattgataatcctagttcc |
47432346 |
T |
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| Q |
161 |
ccaagccaagttata |
175 |
Q |
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|||||||||| |||| |
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| T |
47432347 |
ccaagccaagatata |
47432361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 9178929 - 9179082
Alignment:
| Q |
44 |
tgatctataattatccaaaatattgccaaactcgtatttgttgtttgatgtatccatgatg-cttccaccactagcttataatccggctcaatttgcacg |
142 |
Q |
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||||||| ||||| |||| |||||||||||||| |||| ||||| | ||||||||||||| |||||||||| |||||| |||| ||||||||| ||| |
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| T |
9178929 |
tgatctacaattaaccaacatattgccaaactcatattgattgttagttgtatccatgatgtcttccaccaccagcttacaatctagctcaatttacacc |
9179028 |
T |
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| Q |
143 |
atgggtaatcctaattccccaagccaagttataccctcccttaatccctatgct |
196 |
Q |
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|| | ||||||||||||||||||||||| |||| |||||||| ||||| ||||| |
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|
| T |
9179029 |
attgataatcctaattccccaagccaagatataacctcccttgatcccaatgct |
9179082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 43391201 - 43391335
Alignment:
| Q |
62 |
aatattgccaaactcgtatttgttgtttgatgtatccatgatg-cttccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattcc |
160 |
Q |
| |
|
|||||||||||| || ||| |||||| ||| ||||||| ||| |||||||||||||||| |||||| ||||||||| ||| || |||||||| |||| |
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| T |
43391201 |
aatattgccaaaatctgattggttgttagatttatccataatgtcttccaccactagcttgtaatccagctcaatttacaccattaataatcctagttcc |
43391300 |
T |
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| Q |
161 |
ccaagccaagttataccctcccttaatccctatgc |
195 |
Q |
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|||| ||||| |||| |||||||| |||| |||| |
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| T |
43391301 |
ccaaaccaagatatagtctcccttagtcccaatgc |
43391335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 7120013 - 7120141
Alignment:
| Q |
62 |
aatattgccaaactcgtatttgttgtttgatgtatccatgatgc-ttccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattcc |
160 |
Q |
| |
|
|||||||||||| || ||| |||||| ||| ||||||| || | ||||||||||||||| || ||||||||||||| || | |||||||| |||| |
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| T |
7120013 |
aatattgccaaaatctgattagttgttagatttatccatcataccttccaccactagctttccttctagctcaatttgcaccattgataatcctagttcc |
7120112 |
T |
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| Q |
161 |
ccaagccaagttataccctcccttaatcc |
189 |
Q |
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|||||||||| |||| | ||||||||||| |
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| T |
7120113 |
ccaagccaagatatagcttcccttaatcc |
7120141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 2704113 - 2704220
Alignment:
| Q |
63 |
atattgccaaactcgtatttgttgtttgatgtatccatgatgct-tccaccactagcttataatccggctcaatttgcacgatgggtaatcctaattccc |
161 |
Q |
| |
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||||||||||| || ||| |||||| || | ||||||||||| ||||||||||||||| |||| ||||||||||||| || | || |||||||| | |
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| T |
2704113 |
atattgccaaagtcagattggttgttagaattttccatgatgctgtccaccactagcttacaatctagctcaatttgcaccattgacaaacctaattcac |
2704212 |
T |
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| Q |
162 |
caagccaa |
169 |
Q |
| |
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|||||||| |
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| T |
2704213 |
caagccaa |
2704220 |
T |
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