View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2767_low_6 (Length: 629)
Name: NF2767_low_6
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_6 |
 | |
|
| [»] scaffold0003 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 102 - 607
Target Start/End: Original strand, 42312834 - 42313347
Alignment:
| Q |
102 |
cacagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggttta |
201 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
42312834 |
cacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggttta |
42312933 |
T |
|
| Q |
202 |
annnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctgaaacaccaaat |
301 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |||||||||||| |||| |
|
|
| T |
42312934 |
atttttttctaacatagaacaccaaactataagaagatacaaaaagcaagtgaattcaatgtactcgtagcctctttctattcaagctgaaacactaaat |
42313033 |
T |
|
| Q |
302 |
tctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaagg-nnnnnnnnnngtgaaatacagagttaaaca-catgaacaaataga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
42313034 |
tctaattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaaggaaaaaaagaaagtgaaatacagagctaaacatcatgaacaaataga |
42313133 |
T |
|
| Q |
400 |
cacacaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaaactcttcc- |
498 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42313134 |
cacaaaaatacatcatcttatatcagaaattatataacacagaaactcacaatcatgtttagttcttcaacaatttttaaccaaagctaaaacttttcca |
42313233 |
T |
|
| Q |
499 |
----nnnnnnnnnttaacaaccatcaatcaagcaaatttaccgattggtccaaaactgtaaaacctgaaaa-ccagttgctctattttgataaatcgaga |
593 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| | |||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
42313234 |
aaaaataaataaattaacaaccaccaatcgagccaatttaccaactggttcaaaactgtaaaacctgaaaacccaattgctctattttgataaattgaga |
42313333 |
T |
|
| Q |
594 |
ggtggagagtgacg |
607 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42313334 |
ggtggagagtgacg |
42313347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 135 - 353
Target Start/End: Complemental strand, 43227309 - 43227081
Alignment:
| Q |
135 |
agagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataag |
234 |
Q |
| |
|
||||| ||||||||||| || |||||||||||| ||||||||||||||||| ||||| | | |||| | ||||||||||||||||||| | | |
|
|
| T |
43227309 |
agagatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagtagttttaatttttt-taacatagaacaccaaactcaatg |
43227211 |
T |
|
| Q |
235 |
aagattcaaaaagcaagtgaattcaatgttctcatagcctctatctattta------agctga------aacaccaaattctaattatttgccatgatta |
322 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||| ||| ||||| || |||| | |||||||||||| |||||||||||||||| | |
|
|
| T |
43227210 |
a-gattcaaaaatcaagtgaattcaatgttctcatagcatctttctatatattctcaagctcactttgtaacaccaaattcaaattatttgccatgataa |
43227112 |
T |
|
| Q |
323 |
gaacaaaaaccaaaacaaccaccatgagtaa |
353 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
43227111 |
gaacaaaaaccaaaacaaccaccataagtaa |
43227081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 42312743 - 42312776
Alignment:
| Q |
11 |
atcatcaaatagagatgcagatttaactatacat |
44 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
42312743 |
atcatcaaataaagatgcagatttaactatacat |
42312776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 102 - 586
Target Start/End: Original strand, 20909720 - 20910210
Alignment:
| Q |
102 |
cacagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggttta |
201 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
20909720 |
cacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggttta |
20909819 |
T |
|
| Q |
202 |
annnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctgaaacaccaaat |
301 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||| |
|
|
| T |
20909820 |
atttttt-ctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctattcaagctgaaacactaaat |
20909918 |
T |
|
| Q |
302 |
tctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-catgaacaaatagac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20909919 |
actaattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaagg-gaaaaaaaagtgaaatacagagttaaacatcatgaacaaatagac |
20910017 |
T |
|
| Q |
401 |
ac-acaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaaactcttcc- |
498 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20910018 |
acaaaaaatacttcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaaacttttcca |
20910117 |
T |
|
| Q |
499 |
----nnnnnnnnnttaacaaccatcaatcaagcaaatttaccgattggtccaaaactgtaaaacctgaaaa-ccagttgctctattttgataa |
586 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
20910118 |
aaaaataaataaattaacaaccaccaatcgagccaatttaccaattggttcaaaactgtaaaacctgaaaacccaattgctctattttgataa |
20910210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 102 - 586
Target Start/End: Original strand, 20924168 - 20924658
Alignment:
| Q |
102 |
cacagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggttta |
201 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
20924168 |
cacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggttta |
20924267 |
T |
|
| Q |
202 |
annnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctgaaacaccaaat |
301 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||| |
|
|
| T |
20924268 |
atttttt-ctaacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctattcaagctgaaacactaaat |
20924366 |
T |
|
| Q |
302 |
tctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-catgaacaaatagac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20924367 |
actaattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaagg-gaaaaaaaagtgaaatacagagttaaacatcatgaacaaatagac |
20924465 |
T |
|
| Q |
401 |
ac-acaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaaactcttcc- |
498 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20924466 |
acaaaaaatacttcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaaacttttcca |
20924565 |
T |
|
| Q |
499 |
----nnnnnnnnnttaacaaccatcaatcaagcaaatttaccgattggtccaaaactgtaaaacctgaaaa-ccagttgctctattttgataa |
586 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
20924566 |
aaaaataaataaattaacaaccaccaatcgagccaatttaccaattggttcaaaactgtaaaacctgaaaacccaattgctctattttgataa |
20924658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 27445236 - 27445105
Alignment:
| Q |
141 |
atcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataagaagatt |
240 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||| |||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
27445236 |
atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt |
27445137 |
T |
|
| Q |
241 |
caaaaagcaagtgaattcaatgttctcatagc |
272 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
27445136 |
caaaaagcaagtgaactcaatgttctcatagc |
27445105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 491
Target Start/End: Complemental strand, 27445002 - 27444879
Alignment:
| Q |
368 |
gaaatacagagttaaaca-catgaacaaatagacacacaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttctt |
466 |
Q |
| |
|
|||||||||||||||||| |||||||||| | || | ||| |||| ||| ||| | ||||||||||||| ||| ||||||||| || ||| ||||||| |
|
|
| T |
27445002 |
gaaatacagagttaaacatcatgaacaaacatgca-aaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaagttctt |
27444904 |
T |
|
| Q |
467 |
caacaatttttaaccaaagctaaaa |
491 |
Q |
| |
|
|||| ||||| ||| ||||||||| |
|
|
| T |
27444903 |
caactattttgaactgaagctaaaa |
27444879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 102 - 586
Target Start/End: Original strand, 41326614 - 41327102
Alignment:
| Q |
102 |
cacagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggttta |
201 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
41326614 |
cacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaaaactcttgcttcatcatatggcagtggttta |
41326713 |
T |
|
| Q |
202 |
annnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctatttaagctgaaacaccaaat |
301 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |
|
|
| T |
41326714 |
atttttttctaacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttcttatagcctctttctattcaagctgaaacactaaat |
41326813 |
T |
|
| Q |
302 |
tctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-catgaacaaatagac |
400 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
41326814 |
tctaattatttgccatgaatagaac-aaaaccaaaacaacgaccataagtaagg--gaaaaaaagtgaaatacagagttaaacatgatgaagaaatagac |
41326910 |
T |
|
| Q |
401 |
acacaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaaactcttcc-- |
498 |
Q |
| |
|
||| |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41326911 |
acaaaaatacatcatctcatatcggaaattatataacacagaaactcacaaccatgtttagttcttcaacaatttttaaccaaagctaaaacttttccaa |
41327010 |
T |
|
| Q |
499 |
---nnnnnnnnnttaacaaccatcaatcaagcaaatttaccgattggtccaaaactgtaaaacctgaaaa-ccagttgctctattttgataa |
586 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
41327011 |
aaaataaataaattaacaaccaccaatcgagccaatttaccaattggttcaaaactgtaaaacctgaaaacccaattgctctattttgataa |
41327102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 8e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 211 - 583
Target Start/End: Complemental strand, 53690094 - 53689708
Alignment:
| Q |
211 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctat------ttaagct------gaaacacca |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||| | ||||| ||||||||| |
|
|
| T |
53690094 |
taacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttctcatagcatctttctatagattttcaagctcactttgaaacacca |
53689995 |
T |
|
| Q |
299 |
aattctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-catgaacaaata |
397 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| | ||||||| |||| |
|
|
| T |
53689994 |
aat-ctaattatttttcatgattagaacaaaaaccaaaacagccaccataggtaagggaaaaaaaa-gtgaaatacagagttaagcgtcatgaactaata |
53689897 |
T |
|
| Q |
398 |
gacacacaaa-tacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagct-aaaactct |
495 |
Q |
| |
|
|| ||| ||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| | |
|
|
| T |
53689896 |
gatacaaaaaatacatcatctcatgtcagaaattatttaaaacagaaactcacagccctgtttagttattcaacaatttttaaccaaagctaaaaacttt |
53689797 |
T |
|
| Q |
496 |
tccnnnnnnnnnttaacaaccatcaatcaagcaaatttaccgattggtccaaaactgtaaaacctgaaaa-ccagttgctctattttga |
583 |
Q |
| |
|
||| |||||||||| ||||| |||||||||||| |||||| |||||||||| ||| |||||| ||| |||||||||||||| |
|
|
| T |
53689796 |
tccaaaaaagaattaacaaccaccaatctagcaaatttaccaattggttcaaaactgtagaacttgaaaacccaattgctctattttga |
53689708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 211 - 583
Target Start/End: Original strand, 52310803 - 52311190
Alignment:
| Q |
211 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcatagcctctatctat------ttaagct------gaaacacca |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| | ||||| ||||||||| |
|
|
| T |
52310803 |
taacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttctcatagcctctttctatagattttcaagctcactttgaaacacca |
52310902 |
T |
|
| Q |
299 |
aattctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-catgaacaaata |
397 |
Q |
| |
|
||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||| |||| |
|
|
| T |
52310903 |
aat-caaattatttgtcatgattagaacaaaaaccaaaacaaccaccataagtaaggaaaaaaaaaagtgaaatacagagttaagcatcatgaactaata |
52311001 |
T |
|
| Q |
398 |
gacacacaaa-tacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagct-aaaactct |
495 |
Q |
| |
|
|| ||| ||| ||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| | |
|
|
| T |
52311002 |
gatacaaaaaatacatcatctcatgttagaaattatttaaaacagaaactcacagccctgtttagttattcaacaatttttaaccaaagctaaaaaaaat |
52311101 |
T |
|
| Q |
496 |
tccnnnnnnnnnttaacaaccatcaatcaagcaaatttaccgattggtccaaaactgtaaaacctgaaaa-ccagttgctctattttga |
583 |
Q |
| |
|
|| |||||||||| ||||| |||||||||||| |||||| |||||||| | ||| |||||| ||| |||||||||||||| |
|
|
| T |
52311102 |
tctaaaaaagaattaacaaccaccaatctagcaaatttaccaattggttcaaaactgcagaacttgaaaacccaattgctctattttga |
52311190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 52128008 - 52127954
Alignment:
| Q |
211 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc |
265 |
Q |
| |
|
|||||||||||||||||| ||| | || |||||| ||||||||||||||||||| |
|
|
| T |
52128008 |
taacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc |
52127954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 31688793 - 31688760
Alignment:
| Q |
309 |
atttgccatgattagaacaaaaaccaaaacaacc |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
31688793 |
attttccatgattagaacaaaaaccaaaacaacc |
31688760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 104 - 353
Target Start/End: Complemental strand, 11504630 - 11504368
Alignment:
| Q |
104 |
cagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaan |
203 |
Q |
| |
|
|||||||||||||| | || |||||||||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||| | |||||| | |
|
|
| T |
11504630 |
cagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa |
11504531 |
T |
|
| Q |
204 |
nnnnnnctaacatagaacaccaaactataagaagattcaaaaagcaagtgaatt-caatgttctcatagcctctatcta------tttaagc------tg |
290 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||| | || ||||||||||||| |||| || |||| || |
|
|
| T |
11504530 |
atttttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttcaagctcactttg |
11504431 |
T |
|
| Q |
291 |
aaacaccaaattctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaa |
353 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
11504430 |
aaacactgaactcaaattatttgccatgattagaacaaaaaccataacaaccaccataagtaa |
11504368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 487
Target Start/End: Original strand, 18939973 - 18940170
Alignment:
| Q |
289 |
tgaaacaccaaattctaattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-ca |
387 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||| || |
|
|
| T |
18939973 |
tgaaacaccgaactcaaattatttgccatgattagaacaaaaaccaaaacaaccaccataagtaa---caaaaaaaagtgaaatacagagcttaacatca |
18940069 |
T |
|
| Q |
388 |
tgaacaaataga-cacacaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagc |
486 |
Q |
| |
|
|||| ||| | | || | ||||| || |||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||| |||||||| |||||| |
|
|
| T |
18940070 |
tgaaaaaacacaccataaaaatatataatctcatgctagaaattatataaaacagaaactcacaaccctgtttaattcttcaactatttttaatcaaagc |
18940169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 18939778 - 18939865
Alignment:
| Q |
102 |
cacagtggcatcaagtaaaacatcttcgattacagagagatcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatg |
190 |
Q |
| |
|
|||||| ||||||| ||| || |||||||| | | ||| |||||||| | ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
18939778 |
cacagttgcatcaattaagacgtcttcgat-ataaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatg |
18939865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 24760573 - 24760519
Alignment:
| Q |
211 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttc |
265 |
Q |
| |
|
|||||||||||||||||| ||| | || |||||| ||||||||||||||||||| |
|
|
| T |
24760573 |
taacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc |
24760519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 305 - 490
Target Start/End: Original strand, 7828372 - 7828554
Alignment:
| Q |
305 |
aattatttgccatgattagaacaaaaaccaaaacaaccaccatgagtaaggnnnnnnnnnngtgaaatacagagttaaaca-catgaacaaatagacaca |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||| | || || |
|
|
| T |
7828372 |
aattatttgccatgattagaacaaaaaccaaaacaaccaccataacaaa-----aaaaaaagtgaaatacagagttaaacatcatgaacaaacacaccca |
7828466 |
T |
|
| Q |
404 |
caaa-tacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttcttcaacaatttttaaccaaagctaaa |
490 |
Q |
| |
|
||| |||||| || |||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7828467 |
aaaaatacatcttcccatgctagaaattatataaaacagaaactcacagccccgtttagttcttcaactatttttaaccaaagctaaa |
7828554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 7828265 - 7828311
Alignment:
| Q |
211 |
taacatagaacaccaaactataagaagattcaaaaagcaagtgaatt |
257 |
Q |
| |
|
||||||||||||| || || |||||| |||||||||||||||||||| |
|
|
| T |
7828265 |
taacatagaacacaaacctctaagaaaattcaaaaagcaagtgaatt |
7828311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 42122 - 42253
Alignment:
| Q |
141 |
atcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataagaagatt |
240 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||| |||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
42122 |
atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt |
42221 |
T |
|
| Q |
241 |
caaaaagcaagtgaattcaatgttctcatagc |
272 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
42222 |
caaaaagcaagtgaactcaatgttctcatagc |
42253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 141 - 272
Target Start/End: Original strand, 35452 - 35582
Alignment:
| Q |
141 |
atcttcctgtcgaacaacacttgattccaaaactcttgcttcatcatatggcaatggtttaannnnnnnctaacatagaacaccaaactataagaagatt |
240 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||| |||||||||| ||||| | |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
35452 |
atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaatttttt-taacatagaacaccaaactcatagaagatt |
35550 |
T |
|
| Q |
241 |
caaaaagcaagtgaattcaatgttctcatagc |
272 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
35551 |
caaaaagcaagtgaactcaatgttctcatagc |
35582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 491
Target Start/End: Original strand, 42356 - 42479
Alignment:
| Q |
368 |
gaaatacagagttaaaca-catgaacaaatagacacacaaatacatcatctcatgtcagaaattatataacacagaaactcacagccatgtttagttctt |
466 |
Q |
| |
|
|||||||||||||||||| |||||| ||| | || | ||| |||| ||| ||| | ||||||||||||| ||| ||||||||| || ||| ||||||| |
|
|
| T |
42356 |
gaaatacagagttaaacatcatgaaaaaacatgca-aaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaagttctt |
42454 |
T |
|
| Q |
467 |
caacaatttttaaccaaagctaaaa |
491 |
Q |
| |
|
|||| ||||| ||| |||||||||| |
|
|
| T |
42455 |
caactattttgaactaaagctaaaa |
42479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 35614 - 35664
Alignment:
| Q |
292 |
aacaccaaattctaattatttgccatgattagaacaaaaaccaaaacaacc |
342 |
Q |
| |
|
||||| ||| || ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
35614 |
aacactaaactcaaatgattttccatgattagaacaaaaaccaaaacaacc |
35664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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