View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2767_low_8 (Length: 558)
Name: NF2767_low_8
Description: NF2767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2767_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 20 - 553
Target Start/End: Complemental strand, 3787803 - 3787282
Alignment:
| Q |
20 |
aaaactatcggagcctagagcagtatcccaattcatggaaaaacaaactcgaacttatcccaaaaagcacaacgatgagcatagattgtcactatttatg |
119 |
Q |
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| T |
3787803 |
aaaactatcggagcctagagcagtatcccaattcatggaaaaacaaacttgaacttatcccaaaaagcacaacga---gcatagattgtcactatttatg |
3787707 |
T |
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| Q |
120 |
gacaatttataaatagacgaaatacccttgtttttaagtcagtatttcacctcaattcttcccattgacttcaaaacaatgatggtattaatttatccat |
219 |
Q |
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| T |
3787706 |
gacaagttataaatagacgaaatacccttgtttttaagtcagtatttcacctcaattcttcccattgacttcaaaacaatgatggtattaatttatcc-- |
3787609 |
T |
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| Q |
220 |
caaccattttaatgatctcaccaatgcttccgagtacttttagcaccgcctctagaataatgataaatattattactagtgtctctctaagatgatgttg |
319 |
Q |
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| T |
3787608 |
--------ttaatgatctcaccaatgcttccgagtacttttagcaccgcctctagaataatgataaatattattactagtgtctctctaggatgatgttg |
3787517 |
T |
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| Q |
320 |
agtaatcttagaaccacctctctaaaatgagattgagtattcgtatcatcgcctctttaagttgatgttgactataatttgcaacttctttaagccattt |
419 |
Q |
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| T |
3787516 |
agtaatcttaaaaccacctctctaaaatgagattgagtattcgtatcatcgcctctttaggttgatgttgactataatttgcaaactctttaagccattt |
3787417 |
T |
|
| Q |
420 |
ttagtttccaacatttctagttttgttctatcacctagaaaagcttgtttagctataatctatataaacatgtgtcactaacatgcaccaactcaaaatc |
519 |
Q |
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| T |
3787416 |
ttagtttccaacatttctagttttgttctatcacgtagaaaagcttgtttagctataatctatataaacatgtgtcactagcatgcaccaactcaaaatc |
3787317 |
T |
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| Q |
520 |
t-acagcttagttatttcatgtgagtattatctag |
553 |
Q |
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| T |
3787316 |
tcacagcttagttatttcatgtgagtcttaactag |
3787282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 3801805 - 3801869
Alignment:
| Q |
20 |
aaaactatcggagcctagagcagtatcccaattcatggaaaaacaaactcgaacttatcccaaaa |
84 |
Q |
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||||||||||| | ||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
3801805 |
aaaactatcggtgtctagagctatatcctaattcatggaaaaacaaactctaacttatcccaaaa |
3801869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 34036811 - 34036762
Alignment:
| Q |
173 |
aattcttcccattgacttcaaaacaatgatggtattaatttatccatcaa |
222 |
Q |
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|||||||| |||||||||||||||| |||| || |||||||| ||||||| |
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| T |
34036811 |
aattcttcacattgacttcaaaacagtgatagtgttaatttaaccatcaa |
34036762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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