View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_high_6 (Length: 378)
Name: NF2768_high_6
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 30098900 - 30099251
Alignment:
| Q |
17 |
catcatcaactgttgcaggtaactannnnnnnngtggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagcta |
116 |
Q |
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| T |
30098900 |
catcatcaactgttgcaggtaactattttttttgttgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagcta |
30098999 |
T |
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| Q |
117 |
gtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaagga |
216 |
Q |
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| T |
30099000 |
gtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaagga |
30099099 |
T |
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| Q |
217 |
atagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099100 |
atagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaag |
30099199 |
T |
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| Q |
317 |
ctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgt |
368 |
Q |
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| T |
30099200 |
ctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgt |
30099251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 115 - 364
Target Start/End: Complemental strand, 30091914 - 30091666
Alignment:
| Q |
115 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
214 |
Q |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
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| Q |
215 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
314 |
Q |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
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| Q |
315 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
364 |
Q |
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| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatttgatg |
30091666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 171 - 364
Target Start/End: Complemental strand, 30087879 - 30087686
Alignment:
| Q |
171 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
270 |
Q |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
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| Q |
271 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
364 |
Q |
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| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatg |
30087686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 35171551 - 35171429
Alignment:
| Q |
199 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
298 |
Q |
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||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
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| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
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| Q |
299 |
tagctggcatggaccaagctatt |
321 |
Q |
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| || || ||||| ||||||||| |
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| T |
35171451 |
ttgcaggaatggatcaagctatt |
35171429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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