View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_high_7 (Length: 360)
Name: NF2768_high_7
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_high_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 34220004 - 34220354
Alignment:
| Q |
11 |
caaaggaacaactcttggtaaaagattttctttctgtct--gtatatatttattatagttgtcttcgtacctgtgttaagcttcaatcgattgagagtgt |
108 |
Q |
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| T |
34220004 |
caaaggaacaactcttggtaaaagattttctttccgtctttgtatatatttattatagttgtcttcgtacctgtgttaagcttcaatcgattgagagtgt |
34220103 |
T |
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| Q |
109 |
taacagaatgatcagaggcttagtatgcatgtttggtatcatggcatcgttgagtttgtcaaaatcatagcgagtaaaagctatgtaggtagctcaccca |
208 |
Q |
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| T |
34220104 |
taacagaatgatcagaggcttagtatgcatgtttggtatcatggcatcgttgagtttgtcaaaatcatagcgagtaaaagctatgtaggtggctcaccca |
34220203 |
T |
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| Q |
209 |
ccatgattccaaagcacttaaatattttggtgcatggcattaaacagtattttttatgaatcagcatatttattaaacaacacgtatcatacaagacgta |
308 |
Q |
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| T |
34220204 |
ccatgattccaaagcacttaaatattttggtgcatggcattaaacagta-tttttatgaatcagcatatttattaaacaaccggtatcatacaagacgta |
34220302 |
T |
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| Q |
309 |
cgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccc |
360 |
Q |
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| T |
34220303 |
cgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccc |
34220354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 34208924 - 34208994
Alignment:
| Q |
60 |
attatagttgtcttcgtacctgtgttaagcttcaatcgattgagagtgttaacagaatgatcagaggctta |
130 |
Q |
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| T |
34208924 |
attattgttgtctttgtacctgtgtttaggtttaatccattgagagtgataatagaatgatcagaggctta |
34208994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 44253879 - 44253941
Alignment:
| Q |
293 |
tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggt |
355 |
Q |
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| T |
44253879 |
tatcatacaaggcatgcgataggggacaaagacgaaactgaacaaagggcccgaatttgcggt |
44253941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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