View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_high_9 (Length: 327)
Name: NF2768_high_9
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 54916490 - 54916804
Alignment:
| Q |
16 |
gtaaattcatagtaattgcatccgatcctttgttttaaaagaaaatgaaattatctagagtcttttggaagaagctaagagcatgaagcnnnnnnnn--- |
112 |
Q |
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| T |
54916490 |
gtaaattcatagtaattgcatccgatcctttgttttaaaagaaaatgaaattatctagagtcttttggaagaagctaagagcatgaagcttttttttttt |
54916589 |
T |
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| Q |
113 |
accttgtaaatttgaccaatcgtagaagcaaaatgattgtaaaactcacctgtcaaaaaacagtaagtgtgcaaccgccaatgacagaaagcacggtttc |
212 |
Q |
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| T |
54916590 |
accttgtaaatttgaccaatcgtagaagcaaaatgattgtaaaactcacctgtcaaaaaacagtaagtgtgcaaccgccaatgacagaaagcacggtttc |
54916689 |
T |
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| Q |
213 |
ttaaaatccagccatgagataaatggagtctcaatttagcaaaataaatccctcaaacatagcatatacacgagatgtatgacatagacctacatatatc |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54916690 |
ttaaaatccagccataagataaatggagtctcaatttagcaaaataaatccctcaaacatagcatatacacgagatgtatgacatagacctacatatatc |
54916789 |
T |
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| Q |
313 |
tttggtgtatctaca |
327 |
Q |
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| T |
54916790 |
tttggtgtatctaca |
54916804 |
T |
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