View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_low_17 (Length: 249)
Name: NF2768_low_17
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 23381451 - 23381227
Alignment:
| Q |
8 |
tttagtttcatcaaatggaacatttgaggttggtttcatcactccaagagattcaacaaatctatattttcgtatatggttaaaaaatgtgacccacacc |
107 |
Q |
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| T |
23381451 |
tttagtttcatcagatggaatatttgaggttggtttcatcagtccaagagattcaacaaatctatattttagtatatagttaaaaaatgtgacccacacc |
23381352 |
T |
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| Q |
108 |
acttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcttatgcttcttcgaatgttacaaccacaaaagggaacatcccaattacac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||| |
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| T |
23381351 |
acttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcttatgcttcttcgaatgttacaaccaaacaagggaacaacccaattgcac |
23381252 |
T |
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| Q |
208 |
gtgtgatggattctggtaatcttgt |
232 |
Q |
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| T |
23381251 |
gtgtgatggattctggtaatcttgt |
23381227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 23347764 - 23347995
Alignment:
| Q |
1 |
cgcagcttttagtttcatcaaatggaacatttgaggttggtttcatcactccaagagattcaacaaatctatattttcgtatatggttaaaaaatgtgac |
100 |
Q |
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|||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
23347764 |
cgcagcctttagtttcatcagatgtaacatttgaggttggtttcatcagtccaagagattcaacaaatctatattttggtatatggttcaaaaatgtgac |
23347863 |
T |
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| Q |
101 |
ccacaccacttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcttatgcttcttcgaatgttacaaccacaaaagggaacatccca |
200 |
Q |
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| T |
23347864 |
caacaccacttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcttatacttcttcgaatgttacaaccaaaaaagggaacaaccca |
23347963 |
T |
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| Q |
201 |
attacacgtgtgatggattctggtaatcttgt |
232 |
Q |
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| T |
23347964 |
attgcacatgtgatggattccggtaatcttgt |
23347995 |
T |
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