View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_low_2 (Length: 524)
Name: NF2768_low_2
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 6070424 - 6070915
Alignment:
| Q |
17 |
aaatctcagatgaataacatttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgt |
116 |
Q |
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|||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6070424 |
aaatctcatttgaacaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctttgggtgt |
6070523 |
T |
|
| Q |
117 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6070524 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacacc |
6070623 |
T |
|
| Q |
217 |
aactagctcagaccaatttcttcttgtgggattatttctccctgaaattaattatttaatcttatttcaaatcatttttatatttatgagaaagccaaaa |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6070624 |
aactagctcagaccaatttcttcttgttggattatttctccctgaaattaattatttaatcttatttcaaatcatttttatatttatgagaaagccaaaa |
6070723 |
T |
|
| Q |
317 |
tatatattcaatataactatttaaagcaaaagattgttagttcccgtgatgatggatcaatttgttatccaatttaaactcgaattctccacttattcac |
416 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| |||| | |||||||||||||||||||||||||||| |
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| T |
6070724 |
tatatattcaatatcactatttaaatcaaaagattgttagttcccgtgacgatggatcaa-ttggtatcgagtttaaactcgaattctccacttattcac |
6070822 |
T |
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| Q |
417 |
aagtgaatttttaatcattagattatctgac-aaaaataaacattagaactctcttgcgaagggttcatttagctgctcctgaggaggataagt |
509 |
Q |
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| T |
6070823 |
gagtgaatttttaattattaggttatctgacaaaaaaaaaacattagaactcacttggcaagggttcattta-ctgctcctgaggaggataagt |
6070915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 6055961 - 6055738
Alignment:
| Q |
35 |
atttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaa |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | || | | | |
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| T |
6055961 |
atttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctcttg-------aacctg--------a |
6055877 |
T |
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| Q |
135 |
aatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6055876 |
aatagccaggtggcaccactcgaatttcaactccatgcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatt |
6055777 |
T |
|
| Q |
235 |
tcttcttgtgggattatttctccctgaaattaattattt |
273 |
Q |
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| T |
6055776 |
tcttcttgttggattatttctccctgaaattaattattt |
6055738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 6085518 - 6085742
Alignment:
| Q |
35 |
atttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaa |
134 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| | | | ||||||||||||||| |
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| T |
6085518 |
atttagttgatgaatcaaccaattattggagtcctaatgaccttattagattcatcaacatacaatcgaactctcttgaacctgaaatcagcagtaacaa |
6085617 |
T |
|
| Q |
135 |
aatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatt |
234 |
Q |
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| | |||| ||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||| |||| | |
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| T |
6085618 |
atgaatcagggggcaccacttgaatttcaactccagatatatcttcctttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaact |
6085717 |
T |
|
| Q |
235 |
tcttcttgtgggattatttctccct |
259 |
Q |
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| || |||| || |||||| ||||| |
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| T |
6085718 |
tgtttttgtagggttatttgtccct |
6085742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 6055740 - 6055693
Alignment:
| Q |
292 |
ttttatatttatgagaaagccaaaatatatattcaatataactattta |
339 |
Q |
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||||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
6055740 |
ttttatattaatgagaaagccaaaatatatgttcaatatcactattta |
6055693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 6055674 - 6055626
Alignment:
| Q |
389 |
tttaaactcgaattctccacttattcacaagtgaatttttaatcattag |
437 |
Q |
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| T |
6055674 |
tttaagctcaaattctccacttaatcacgagtgaatttttaatcattag |
6055626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 6035562 - 6035509
Alignment:
| Q |
172 |
catctcttcctttattttcctctctgcttcttctgctgtcacaccaactagctc |
225 |
Q |
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|||||||||||||||||| |||| ||||||||| | || |||||||||||||| |
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| T |
6035562 |
catctcttcctttatttttctctttgcttcttcaacagtgacaccaactagctc |
6035509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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