View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_low_3 (Length: 459)
Name: NF2768_low_3
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 116 - 372
Target Start/End: Original strand, 23381651 - 23381908
Alignment:
| Q |
116 |
tatgtaagattctgaaaatatacattattactatcacacatgtgacatgtatattcaaagcaacgtgtttttaaattgctacttttggcaatatatcaaa |
215 |
Q |
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| T |
23381651 |
tatgtaagattctgaaaatatacattattactatcacacatgtgacatgtatattcaaagcaacgtgtttttaaattgctacttttggtaacatatcaaa |
23381750 |
T |
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| Q |
216 |
tatgacaaatgcaatcagaaatggaatgactgtgtaataaaataataaaatcagaaatatatctttcaaaga-gcaattg--ggtttatgttgaatgatg |
312 |
Q |
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| T |
23381751 |
tatgacaaatgcaatcagaaatggaatgactgtgtactaaaataataaaatcagaaatatatgtttgaatgatttgattgttggttgaagaacaat--tg |
23381848 |
T |
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| Q |
313 |
ttagagtgattgtgtcaattgtcagaagaataattttccattttcatttggtatgctgat |
372 |
Q |
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| T |
23381849 |
ttagtgtcattgtgtcaattgtcagaagaataattttccattttcatttggtatgctgat |
23381908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 116 - 277
Target Start/End: Complemental strand, 23347564 - 23347405
Alignment:
| Q |
116 |
tatgtaagattctgaaaatatacattattactatcacacatgtgacatgtatattcaaagcaacgtgtttttaaattgctacttttggcaatatatcaaa |
215 |
Q |
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| T |
23347564 |
tatgtaagattctgaaaatatacattattactatcacacatgtgacatgtatattcaaagcaacgtgtttttaaatttctacttttggcaatatatcaa- |
23347466 |
T |
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| Q |
216 |
tatgacaaatgcaatcagaaatggaatgactgtgtaataaaataataaaatcagaaatatat |
277 |
Q |
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| T |
23347465 |
-atgacaaatgcaatcagaaatggaatgactgtgtactaaaataataaaatcagaaatatat |
23347405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 23345170 - 23345094
Alignment:
| Q |
296 |
gtttatgttgaatgatgttagagtgattgtgtcaattgtcagaagaataattttccattttcatttggtatgctgat |
372 |
Q |
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| T |
23345170 |
gtttctgttgaatgatgttagtgtcattgtgtcaattgtcagaagaataattttccattttcatttggtatgctgat |
23345094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 23381295 - 23381227
Alignment:
| Q |
374 |
ttcttcgaatgttacaaccacaaaagggaacatcccaattacacgtgtgatggattctggtaatcttgt |
442 |
Q |
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| T |
23381295 |
ttcttcgaatgttacaaccaaacaagggaacaacccaattgcacgtgtgatggattctggtaatcttgt |
23381227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 23347677 - 23347627
Alignment:
| Q |
9 |
ttgtttggtgctaaagtatctaatgatgtgcatgttcttacgtaggagaat |
59 |
Q |
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| T |
23347677 |
ttgtttggtgctaaagtatctaatgatgtgcatgttcttacgtaggagaat |
23347627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 374 - 442
Target Start/End: Original strand, 23347927 - 23347995
Alignment:
| Q |
374 |
ttcttcgaatgttacaaccacaaaagggaacatcccaattacacgtgtgatggattctggtaatcttgt |
442 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||| ||||||||||| |
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| T |
23347927 |
ttcttcgaatgttacaaccaaaaaagggaacaacccaattgcacatgtgatggattccggtaatcttgt |
23347995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 23381542 - 23381592
Alignment:
| Q |
9 |
ttgtttggtgctaaagtatctaatgatgtgcatgttcttacgtaggagaat |
59 |
Q |
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| T |
23381542 |
ttgtttggtgctaaagtatctaatgatgtgcatgttcttaggtaggagaat |
23381592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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