View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2768_low_4 (Length: 448)
Name: NF2768_low_4
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 44319840 - 44319458
Alignment:
| Q |
1 |
ccacaaactagcttcgaagtataagatctcacaaattcattttgtaagtatgaattagacctaatttaaaaatctaatatggtatcagagaacatcattc |
100 |
Q |
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| T |
44319840 |
ccacaaactagctttgaagtataagacctcacaaattcattttgtaagtatgaattaaacctaatttaaaaatctaatatggtatcagagaacatcattc |
44319741 |
T |
|
| Q |
101 |
aagccacctgttggacatgatatgatgtattgggaaaaatactcaaatctaacatagaaaaatagaactcttgataaaagtttataagaagtgacatcct |
200 |
Q |
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| T |
44319740 |
aagccacctgttggacatgatatgatgtattgggaaaaatactcaaatctaacatagaaaaatagaactcttgataaaagtttataaaaagtgacattct |
44319641 |
T |
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| Q |
201 |
aaccttacaaattggttttatatcatagtttaatatttggagtttgaaccttgaaaacgttgtccta-----taagtgatgtgtgatacgacttataaca |
295 |
Q |
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| T |
44319640 |
aaccttacaaattggttttatatcatagtttaatatttggagtttgaaccttgaaaacgttgtcctatcagttaagtgatgtgtgatacgacttatagca |
44319541 |
T |
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| Q |
296 |
gaaaactgagtactataatttgtattaattaattcttgtaa-cnnnnnnnngggttaccatgatattggtaagaaattttcac |
377 |
Q |
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| T |
44319540 |
gaaaattgagtactataatttgtattaattaattcttgtaattttttttttgggttaccatgatattggtaagaaattttcac |
44319458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 43460123 - 43460175
Alignment:
| Q |
346 |
gggttaccatgatattggtaagaaattttcacgactgcttagcggtgactaat |
398 |
Q |
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| T |
43460123 |
gggttaccatgatattggtacgaagtttccaccgctgcttagcagtgactaat |
43460175 |
T |
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