View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2768_low_7 (Length: 414)
Name: NF2768_low_7
Description: NF2768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2768_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 48319951 - 48320301
Alignment:
| Q |
24 |
ggaatctgaatttcaggtatactctgttgttgattctcatacattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattattac |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48319951 |
ggaatctgaatttcaggtatactttgttgttgattctcatatattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattaatac |
48320050 |
T |
|
| Q |
124 |
tgttttgatcatattgatcttgaaccattggaacagaaaatgtttcatttgtactaccatttccatgttgttgtaacataacatccgaaaatgaatcagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48320051 |
tgttttgatcatattgatcttgaaccattggaacagaaaatgtttcatttgtactaccatttccatgttgttgtaacataacatccgaaaatgaatcagt |
48320150 |
T |
|
| Q |
224 |
attaccaccctgcccttgttgaatatattcatggtgattttctggtgttactaaattgtacatataaggatcatcacaaccaccatgcacttgttgacta |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
48320151 |
attaccaccctgcccttgttgaatatattcatggtgattttctggtggtactaaattgtacatataaggatcattacaaccaccatgcacttgttgaata |
48320250 |
T |
|
| Q |
324 |
tgatgatcattttctggtgattctaaattgtaagcaaatggatcattatta |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48320251 |
tgatgatcattttctggtgattctaaattgtaagcaaatggatcattatta |
48320301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 26326027 - 26325883
Alignment:
| Q |
46 |
tctgttgttgattctcatacattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattattactgttttgatcatattgatcttg |
145 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||| ||| |||||| | |||| |||||||||||| ||||||| | ||| || ||||| ||| |
|
|
| T |
26326027 |
tctgttgttgattctcattcgttcgtgatgaacta---cccgcttcaaagttattcattccaaatgaaacattattatttggctgaccaagttgattttg |
26325931 |
T |
|
| Q |
146 |
aaccattggaacagaaaatgtttcatttgtactaccatttccatgttg |
193 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
26325930 |
aaccattggaagagaaaatgtttcattagtagtaccatgtccatgttg |
26325883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University