View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2770_high_4 (Length: 246)
Name: NF2770_high_4
Description: NF2770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2770_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 27946009 - 27946241
Alignment:
| Q |
2 |
ctatgttagaatgttcactcttccttgcagtcagaccttagtattttgtgtgaattattatttgaatacatataagaaatttaagatttgg--tgtcaaa |
99 |
Q |
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| T |
27946009 |
ctatgttagaatgttcactcttccttgcagtcagaccttagtattttgtgtgaattattatttgaatacagataagaaatttaagatttggagtgttaaa |
27946108 |
T |
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| Q |
100 |
gtcccaatcacacacgagatagcttcccttcatatataggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacatcc |
199 |
Q |
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| T |
27946109 |
gtcccaatcatacacgagatagcttcccttcata----ggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacatcc |
27946204 |
T |
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| Q |
200 |
tgattctatatcaaaagcttatgttttcctacctttg |
236 |
Q |
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| T |
27946205 |
tcattctatatcaaaagcttatgttttcctacctttg |
27946241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 27437779 - 27437841
Alignment:
| Q |
135 |
ataggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacat |
197 |
Q |
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| T |
27437779 |
ataggcaagtgcacaataacaatgacttagaattgaggttagttaatcccttgaataacacat |
27437841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 27548631 - 27548583
Alignment:
| Q |
36 |
accttagtattttgtgtgaattattatttgaatacatataagaaattta |
84 |
Q |
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| T |
27548631 |
accttagtattttgtgtgaattattattttaatgcagataagaaattta |
27548583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27437520 - 27437557
Alignment:
| Q |
3 |
tatgttagaatgttcactcttccttgcagtcagacctt |
40 |
Q |
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| T |
27437520 |
tatgttaaaattttcactcttccttgcagtcagacctt |
27437557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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