View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2770_low_2 (Length: 488)
Name: NF2770_low_2
Description: NF2770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2770_low_2 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0247 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 21305145 - 21305599
Alignment:
| Q |
17 |
aaatctaagggtattttagatttggaggtatatattaaaatgatacaatattccatagtttaccctcatatctattcaaatattatttgtttaccctaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21305145 |
aaatctaagggtattttagatttggaggtatataataaaatgatacaatattccatagtttaccctcatatctattcaaatattatttgtttaccctaat |
21305244 |
T |
|
| Q |
117 |
tattttttccactttattttataatactccattaaaaataaaaatgagtcaaagaaagttaatgcacttaatccaaaatttcggaacaaatacatcattt |
216 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21305245 |
t-ttttttccactttattttataattctccattaaaaataaaaatgagtcaaagaaagttaatgcacttaatccaaaatttcggaagaaatacatcattt |
21305343 |
T |
|
| Q |
217 |
ttgacccatgtttatttagattttgttatagatggaggagcatatactaattaatccaaacatagtctagaaaaacattannnnnnnnnnnaaatgaaat |
316 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
21305344 |
ttgacccatgtttatttagattttgtaatagat---ggagcatatactaattaatccaaacatagtctagaaaaacatga---ttttttttaaatgaaat |
21305437 |
T |
|
| Q |
317 |
aaaagaccttgttttgaggagcttcaaggtagatcccaaagagaattgaaatcacaaaggttgaaatcccaaaaggagtcatcatcaacatttggaaact |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21305438 |
aaaagaccttgttttgaggagcttcaaggtagatcccaaagagaattcaaatcacaaaggttgaaatcccaaaaggagtcatcatcaacatttggaaact |
21305537 |
T |
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| Q |
417 |
ccattaagttctcctcttgtaatgaagagcatgagccaatattctcactgtccacaggttct |
478 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
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| T |
21305538 |
ccattaagttctcctcttgtaatgaagagcatgacccaattttctcactgtctacatgttct |
21305599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 148354 - 148461
Alignment:
| Q |
354 |
aaagagaattgaaatcacaaaggttgaaatcccaaaaggagtcatcatcaacatttggaaactccattaagttctcctcttgtaatgaagagcatgagcc |
453 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||| || |
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| T |
148354 |
aaagagaatcgtaatcacaaaggttgaaatcccaaaaggagtcatcc---acatttggaaactcaataaagttctcctcttgtaatgaagagcctgaacc |
148450 |
T |
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| Q |
454 |
aatattctcac |
464 |
Q |
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||| ||||||| |
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| T |
148451 |
aattttctcac |
148461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 465
Target Start/End: Original strand, 33903950 - 33904068
Alignment:
| Q |
347 |
agatcccaaagagaattgaaatcacaaaggttgaaatcccaaaaggagtcatcatcaacatttggaaactc---cattaagttctcctcttgtaatgaag |
443 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||| |
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| T |
33903950 |
agatctcaaagagaatcgaaatcacaaaggttgaaatcccaaaaggag---tcatccacatttggaaactcagaaatgaagttctcctcttgtaataaag |
33904046 |
T |
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| Q |
444 |
agcatgagccaatattctcact |
465 |
Q |
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||| ||| ||||| |||||||| |
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| T |
33904047 |
agcctgacccaattttctcact |
33904068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 468
Target Start/End: Original strand, 33762287 - 33762408
Alignment:
| Q |
347 |
agatcccaaagagaattgaaatcacaaaggttgaaatcccaaaaggagtcatcatcaacatttggaaactccatt---aagttctcctcttgtaatgaag |
443 |
Q |
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||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| | | | ||||||||| |||| ||||||||||||||||| |
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| T |
33762287 |
agatctcaaagagaaatgaaatcacaaaggttggaatcccaaaaggagtaatca---atggtagaaaactccatactaaagtactcctcttgtaatgaag |
33762383 |
T |
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| Q |
444 |
agcatgagccaatattctcactgtc |
468 |
Q |
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||||||||||||| ||||||||||| |
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| T |
33762384 |
agcatgagccaattttctcactgtc |
33762408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 33733732 - 33733785
Alignment:
| Q |
347 |
agatcccaaagagaattgaaatcacaaaggttgaaatcccaaaaggagtcatca |
400 |
Q |
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|||||| ||||||||| |||||||||||||||| ||| ||||| |||||||||| |
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| T |
33733732 |
agatccaaaagagaatcgaaatcacaaaggttggaattccaaagggagtcatca |
33733785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 33679366 - 33679398
Alignment:
| Q |
361 |
attgaaatcacaaaggttgaaatcccaaaagga |
393 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
33679366 |
attgatatcacaaaggttgaaatcccaaaagga |
33679398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 22565 - 22523
Alignment:
| Q |
424 |
gttctcctcttgtaatgaagagcatgagccaatattctcactg |
466 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
22565 |
gttcacctcttgtaatgaagagcatgagccaattttctcactg |
22523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 445
Target Start/End: Complemental strand, 5471712 - 5471620
Alignment:
| Q |
347 |
agatcccaaagagaattgaaatcacaaaggttgaaatcccaaaaggagtcatcatcaacatttggaaactccattaagttctcctcttgtaatgaagag |
445 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||| ||||||| |||||||| |||||||||||||| |
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| T |
5471712 |
agatcccaaagagaatcataatcacaaatgttgaaatcccaaaag------tcatcaacaattgaaaactcctcatagttctccacttgtaatgaagag |
5471620 |
T |
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