View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2770_low_3 (Length: 428)
Name: NF2770_low_3
Description: NF2770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2770_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 37376772 - 37377165
Alignment:
| Q |
13 |
caaaggcaattggttggactactggaaatcaaagtcttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaacccttt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37376772 |
caaaagcaattggttggactactggaaatcaaagtcttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaacccttt |
37376871 |
T |
|
| Q |
113 |
ctgcgtacacaaaagagaacttccattgagattgtaataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37376872 |
ctgcgtacacaaaagagaacttccattgagattgtaataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaac |
37376971 |
T |
|
| Q |
213 |
ataaattatttaatttatgttgttacagagatggagagagtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37376972 |
ataaattatttaatttatgttgttacagagatggagagagtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagt |
37377071 |
T |
|
| Q |
313 |
ttgcttagatggttctacaaaacgaaaagatacttccaaagatttgaagagagccacattttctccttgcagattggactcaaatcaggtatat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37377072 |
ttgcttagatggttctacaaaacgaaaagatacttccaaagatttgaagagagccacattttctccttgcagattggactcaaatcaggtatat |
37377165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 37384138 - 37384531
Alignment:
| Q |
13 |
caaaggcaattggttggactactggaaatcaaagtcttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaacccttt |
112 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| | | ||||||||||||| |
|
|
| T |
37384138 |
caaaagcaattggttggactactgaaaatcaaagtctgaaccaagatcttgaaagaatctgttggaaagggagtttagaaatcaagaatcagaacccttt |
37384237 |
T |
|
| Q |
113 |
ctgcgtacacaaaagagaacttccattgagattgtaataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaac |
212 |
Q |
| |
|
|||||||||||| ||||| |||| ||| |||||||||| | ||||||||||||| || ||| ||||||||| || |||| ||||||| |||| |||||| |
|
|
| T |
37384238 |
ctgcgtacacaagagagaccttcaattcagattgtaatcaggctttatctttctctgttctatttatataatttggttgattattttttttgtcaacaac |
37384337 |
T |
|
| Q |
213 |
ataaattatttaatttatgttgttacagagatggagagagtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagt |
312 |
Q |
| |
|
||||||| ||| ||| || ||||| |||||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37384338 |
ataaattgttttattgatattgttgcagagatggagagaatacgcatcaagaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagatt |
37384437 |
T |
|
| Q |
313 |
ttgcttagatggttctacaaaacgaaaagatacttccaaagatttgaagagagccacattttctccttgcagattggactcaaatcaggtatat |
406 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||||||||| || || | || |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37384438 |
ttgcttggatggttcttcaaaacgaaaagttacttccaaagagttcaacaaaggcacattttctccttgcagattggatacaaatcaggtatat |
37384531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 49 - 404
Target Start/End: Complemental strand, 41228351 - 41227996
Alignment:
| Q |
49 |
ttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttccattgagattgta |
148 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||| |||||||| |
|
|
| T |
41228351 |
ttaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaacttcaattcagattgta |
41228252 |
T |
|
| Q |
149 |
ataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgttacagagatggag |
248 |
Q |
| |
|
|| || ||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||| || |
|
|
| T |
41228251 |
atcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttgttgttacagagacaaag |
41228152 |
T |
|
| Q |
249 |
agagtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttc |
348 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||| |||| |||||||||||| |||||| |
|
|
| T |
41228151 |
agagtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgcttcgatgcttctccaaaacgaaaagttacttc |
41228052 |
T |
|
| Q |
349 |
caaagatttgaagagagccacattttctccttgcagattggactcaaatcaggtat |
404 |
Q |
| |
|
|||||| || ||||||| | |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41228051 |
caaagagttcaagagaggcgcattttctccttgcagtttggattcaaatcaggtat |
41227996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University