View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2770_low_4 (Length: 427)
Name: NF2770_low_4
Description: NF2770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2770_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 205 - 411
Target Start/End: Complemental strand, 23704944 - 23704738
Alignment:
| Q |
205 |
taaatagtctttacataataagtatataatttgtttagtctccaactaagttaacaaaatccagcttttaataaaaacattgcttttgttgctatagatc |
304 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
23704944 |
taaatagtctttacataacaagtatataatttgtttagtctgcaactaagttaacaaaatcaagcttttaataaaaacattgcttttgttgttatagatc |
23704845 |
T |
|
| Q |
305 |
ttgatgctgccatcagctcaatttttgggatattggttaaagattacttcaattatcgatacatagttactttctactcataattttaggtcacttttat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23704844 |
ttgatgctgccatcagctcaatttttgggatattggttaaggattacttcaattatcaatacatagttactttctactcataattttaggtcacttttat |
23704745 |
T |
|
| Q |
405 |
cctcttc |
411 |
Q |
| |
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||||||| |
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| T |
23704744 |
cctcttc |
23704738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 43599484 - 43599360
Alignment:
| Q |
205 |
taaatagtctttacataataagtatataatttgtttagtctccaactaagttaacaaaatccagcttttaataaaaacattgcttttgttgctatagatc |
304 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||| ||| |||||||||| || || ||||||||||||||||||||| |
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| T |
43599484 |
taaatagtctctacataataagtatataatatgtttagtctgcaaataagttaacataattaagcttttaat-aatactttgcttttgttgctatagatc |
43599386 |
T |
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| Q |
305 |
ttgatgctgccatcagctcaattttt |
330 |
Q |
| |
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|||||||| ||||||| |||| |||| |
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| T |
43599385 |
ttgatgctaccatcagatcaactttt |
43599360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 23705094 - 23705014
Alignment:
| Q |
58 |
agtcatttgaacattagttaacaaaaaccttatacaagggctataagtctattataaactgttttaattcattcttttaaa |
138 |
Q |
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| T |
23705094 |
agtcattagaacattagttaacaaaaaccttatacaagggctataagtctattataaatcgttttaattcattcttttaaa |
23705014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 43599662 - 43599560
Alignment:
| Q |
35 |
aatcattgaaagattaattaaatagtc---atttgaacattagttaacaaaaaccttatacaagggctataagtctattataaactgttttaattcattc |
131 |
Q |
| |
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|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||| |
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| T |
43599662 |
aatctttgaaagatgaattaaatagtagtgatttgaacattagttaacaaaaaccttagacaagagctatatttctattataaatcgttttaattcattc |
43599563 |
T |
|
| Q |
132 |
ttt |
134 |
Q |
| |
|
||| |
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|
| T |
43599562 |
ttt |
43599560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 23705262 - 23705225
Alignment:
| Q |
34 |
taatcattgaaagattaattaaatagtcatttgaacat |
71 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
23705262 |
taatcattgaaagattaattaaatagtcattagaacat |
23705225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 215 - 411
Target Start/End: Original strand, 40821358 - 40821553
Alignment:
| Q |
215 |
ttacataataagtatataatttgtttagtctccaactaagttaacaaaatccagcttttaataaaaacattgcttttgttgctatagatcttgatgctgc |
314 |
Q |
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|||| ||| ||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40821358 |
ttacttaacaagtatataatttgtttagcctacaactaagttaacaaaatcaagctttaaataaaa-cattgcttttgttgctatagatcttgatgctgc |
40821456 |
T |
|
| Q |
315 |
catcagctcaatttttgggatattggttaaagattacttcaattatcgatacatagttactttctactcataattttaggtcacttttatcctcttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821457 |
catcagctcaatttttgggatattggttaaagattacttcaattatcgatacatagttactttctactcataattttaggtcacttttatcctcttc |
40821553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 14833721 - 14833619
Alignment:
| Q |
35 |
aatcattgaaagattaattaaatagtc---atttgaacattagttaacaaaaaccttatacaagggctataagtctattataaactgttttaattcattc |
131 |
Q |
| |
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|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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| T |
14833721 |
aatctttgaaagatgaattaaatagtagtgatttgaacattagttaacaaaaaccttagacaagggctataattctattataaatcgttttaattcattc |
14833622 |
T |
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| Q |
132 |
ttt |
134 |
Q |
| |
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||| |
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| T |
14833621 |
ttt |
14833619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 14833511 - 14833446
Alignment:
| Q |
254 |
gttaacaaaatccagcttttaataaaaacattgcttttgttgctatagatcttgatgctgccatcag |
320 |
Q |
| |
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||||||| |||| ||||||||||| | | ||||||||||||||||||||||||||||| ||||||| |
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| T |
14833511 |
gttaacataatcatgcttttaataata-ctttgcttttgttgctatagatcttgatgctaccatcag |
14833446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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