View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2771_high_12 (Length: 227)
Name: NF2771_high_12
Description: NF2771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2771_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 28548944 - 28549093
Alignment:
| Q |
8 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctattcccaacggaaattccttttgttgagaaggatttgga |
107 |
Q |
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| T |
28548944 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttctccgtctatttccaacggaaattccttttgttgagaaggatttgga |
28549043 |
T |
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| Q |
108 |
ttatccattgctgaaaattttctgctgaagattagaatatagttgaatta |
157 |
Q |
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| T |
28549044 |
ttatccattgctgaaaattttctgctgaagattagattatagttgaatta |
28549093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 41867474 - 41867325
Alignment:
| Q |
8 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctattcccaacggaaattccttttgttgagaaggatttgga |
107 |
Q |
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| T |
41867474 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttctccgtctatttccaacggaaattccttttgttgagaaggatttgga |
41867375 |
T |
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| Q |
108 |
ttatccattgctgaaaattttctgctgaagattagaatatagttgaatta |
157 |
Q |
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| T |
41867374 |
ttatccattgctgaaaattttctgctgaagattagattatagttgaatta |
41867325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 34704257 - 34704108
Alignment:
| Q |
8 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctattcccaacggaaattccttttgttgagaaggatttgga |
107 |
Q |
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| T |
34704257 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgtagttctgtttctccgtctatttccaacggaaattccttttgttgagaaggatttgga |
34704158 |
T |
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| Q |
108 |
ttatccattgctgaaaattttctgctgaagattagaatatagttgaatta |
157 |
Q |
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| T |
34704157 |
ttatccattgctgaaaattttctgctgaagattagattatagttgaatta |
34704108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 32178904 - 32178960
Alignment:
| Q |
8 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttcttc |
64 |
Q |
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| T |
32178904 |
tgaggtgaattgttgaagtaagttagagtgaagttaaaattgttattcagtttcttc |
32178960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 18638155 - 18638215
Alignment:
| Q |
13 |
tgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctattcc |
73 |
Q |
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| T |
18638155 |
tgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttcttcatcgattcc |
18638215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 40853835 - 40853891
Alignment:
| Q |
8 |
tgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttcttc |
64 |
Q |
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| T |
40853835 |
tgaggtgaattgttgaagtaagttagagtgaagttaaaattgttattcagtttcttc |
40853891 |
T |
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