View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2771_high_2 (Length: 531)
Name: NF2771_high_2
Description: NF2771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2771_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 186 - 378
Target Start/End: Original strand, 37568326 - 37568518
Alignment:
| Q |
186 |
gtaatacaaatgatggtttttaatcatttctaacgagtaaaacataatattctagagaggaaattctctctatcctttgccatggagaaaccgttttacg |
285 |
Q |
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| T |
37568326 |
gtaatacaaatgatggtttttaatcatttctaacgagtaaaacataatattctagagaggaacttctctctatcctttgccatggagaaaccgttttacg |
37568425 |
T |
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| Q |
286 |
tcttctccactcccacccttgaacctgttggtgaatagtgtgtatgacccaatgcattgcatgtgggtgaagtcaaaccaaagaaatttgcta |
378 |
Q |
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| T |
37568426 |
tcttctccactcccacccttgaacctgttggtgaatagtgtgtatgacccaatgcattgcatgtgggtgaagtcaaaccaaagaaatttgcta |
37568518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 371 - 511
Target Start/End: Original strand, 37568543 - 37568685
Alignment:
| Q |
371 |
atttgctaataaatgcatggtgcatttttcctttaggtgcataggctagtagttggca-------gtgcaggaagcttgaaaataaacacctggtacaag |
463 |
Q |
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| T |
37568543 |
atttgctaataaatgcatggtgcatttttcctttctgtgcataggctagtagttggcacttggcagtgcaggaagc-----aataaacacctggtacaag |
37568637 |
T |
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| Q |
464 |
ttttacactaagagcatgaattttggtgtaataggagtgcatggattt |
511 |
Q |
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| T |
37568638 |
ttttactctaagagcatgaattttggtgtaaaaggagtgcatggattt |
37568685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 37568113 - 37568172
Alignment:
| Q |
10 |
aagaatatatagtgaggtgtgttgttcttaatgtcgtgagttacactaaactctctccac |
69 |
Q |
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| T |
37568113 |
aagaatatatagtgaggtgtgttgttcttaatgtcgtgagttacactaaactctctccac |
37568172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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