View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2771_high_5 (Length: 328)
Name: NF2771_high_5
Description: NF2771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2771_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 719421 - 719599
Alignment:
| Q |
18 |
gttatatcagtgaattatttatgttcttaattcnnnnnnncgacatgaaactcctaaattgattatttcatttagagagtgcttgacaaaaactctttag |
117 |
Q |
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| T |
719421 |
gttatatcagtgaattatttatgttcttaattctttttttcgacatgaaactcctaaattgattatttcatttagagagtgcttgacaaaaactctttag |
719520 |
T |
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| Q |
118 |
acttaagctaaatttatagttacataattctatcatacaaatcaactaaccctggcaatatataatcgaccaagaggat |
196 |
Q |
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| T |
719521 |
acttaagctaaatttatagttacataattctatcatacaaatcaactaaccttgacaatatataatcgaccaagaggat |
719599 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 719601 - 719680
Alignment:
| Q |
239 |
ctttagtttgtaaagtttcactacatttagcgtgtcttagtttatgaatatctgaacacaaacgctctccttcctctctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
719601 |
ctttagtttgtaaagtttcactacatttagcgtgtcttagtttatgaatatctgaacacaaacgctctccttcctctctg |
719680 |
T |
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