View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2771_low_1 (Length: 560)
Name: NF2771_low_1
Description: NF2771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2771_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 33499585 - 33499043
Alignment:
| Q |
1 |
atataaggtttaaccaaactatttatagaagaggttcacctaataataaggttaataagcttgttttgcctnnnnnnnnn-tctaaatcccgacaagctt |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
33499585 |
atataaggtttaaccaaactatttatagaagaggttcacctaataataaggttaataagcttgttttgcctaataaaaaaatctaaatcctgacaagctt |
33499486 |
T |
|
| Q |
100 |
catattttacgatatacatcatgacatacttacttcaaactatggaaatggatattccatttgtactaattttcaaagtaaactttattaatttaaataa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499485 |
catattttacgatatacatcatgacatacttacttcaaacgaaggaaatggatattccatttgtactaattttcaaagtaaactttattaatttaaataa |
33499386 |
T |
|
| Q |
200 |
accatatgcagtttacaatattggaaaagcaaacacaaaaagcaaataatttaactagtttaaacaccataaaatgtctcataggaccatcaaagatggc |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499385 |
accatatgcagtttacaatattagaaaagcaaacacaaaaagcaaataatttaactagtttaaacaccataaaatgtctcataggaccatcaaagatggc |
33499286 |
T |
|
| Q |
300 |
caattctaactgtttccgatagg-aggaaaataaaattcatacggaatgaaaagacaagttttatgatcaaaattttaagcgatcctcgtcataatttct |
398 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499285 |
caattctaactgtttccgatcggaaggaaaataaaattcatacggaatgaaaagacaagttttatgatcaaaattttaagcgatcctcgtcataatttct |
33499186 |
T |
|
| Q |
399 |
aaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgcactcac |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33499185 |
aaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttttgcctgcaaaatcaacacaattcaattgagctattcgctctcac |
33499086 |
T |
|
| Q |
499 |
actactcaagagaagagaaggtttgaaacttacatgggccata |
541 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33499085 |
actactcaagagaagagaaggtttgaaacttacatgggccata |
33499043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 355 - 509
Target Start/End: Complemental strand, 33486212 - 33486058
Alignment:
| Q |
355 |
aagttttatgatcaaaattttaagcgatcctcgtcataatttctaaagctgcttgcttgtaagtttcctccatcgagtttgcgccaagtgaagcttgttt |
454 |
Q |
| |
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||||||||||||||||||| |||||||||| | ||||||||||| ||| || |||||||| ||||||| ||| || |||||| || ||||||||||||| |
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| T |
33486212 |
aagttttatgatcaaaattctaagcgatccacatcataatttctccagccgcatgcttgtatgtttccttcattgaatttgcgtcatgtgaagcttgttt |
33486113 |
T |
|
| Q |
455 |
tgcctgcaaaatcaacacaattcaattgagctattcgcactcacactactcaaga |
509 |
Q |
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|||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |
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| T |
33486112 |
tgcctgcaaaattaagacaattcaattgagctattcacactcgtactactcaaga |
33486058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 104 - 294
Target Start/End: Complemental strand, 33486393 - 33486210
Alignment:
| Q |
104 |
ttttacgatatacatcatgacatacttacttcaaactatggaaatggatattccatttgtactaattttcaaagtaaactttattaatttaaataaacca |
203 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || ||||||||||||| ||||| ||||||| |||||||| ||||| |||| ||||||||| |
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| T |
33486393 |
ttttacgatataaatcatgacatactt----caaacgataaaaatggatattccgtttgt--taattttaaaagtaaattttatgaattcaaataaacct |
33486300 |
T |
|
| Q |
204 |
tatgcagtttacaatattggaaaagcaaacacaaaaagcaaataatt-taactagtttaaacaccat-aaaatgtctcataggaccatcaaag |
294 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
33486299 |
tatgcagtttac---accggaaaagcaaacacaaaaagcatataattaaaactagtttaaacaccataaaaattgctcttaggaccatcaaag |
33486210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 541
Target Start/End: Complemental strand, 33485867 - 33485832
Alignment:
| Q |
506 |
aagagaagagaaggtttgaaacttacatgggccata |
541 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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|
| T |
33485867 |
aagaggagagaaggtttgaaacttacatgggccata |
33485832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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