View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2771_low_10 (Length: 233)
Name: NF2771_low_10
Description: NF2771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2771_low_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 4050899 - 4050737
Alignment:
| Q |
71 |
gtaccttaattttattaacttcttcacacattatttacaactacttatctcttattgtttctttctcctccctatatttgcttcatcacattatactgtg |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4050899 |
gtaccttaattttattaacttcttcacacattatttacaactacttatctcttattgtttctttctcctccctatatttgcttcatcacattatactgtg |
4050800 |
T |
|
| Q |
171 |
attgtgttagaaagaaattacaaatatgatnnnnnnntgcaaatgaaacggatgaatttacca |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4050799 |
attgtgttagaaagaaattacaaatatgataaacaaatgcaaatgaaacggatgaatttacca |
4050737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University