View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2771_low_3 (Length: 408)
Name: NF2771_low_3
Description: NF2771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2771_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 4050649 - 4050255
Alignment:
| Q |
1 |
ttccatcatcttctaatagttctttttcaatagctgcatttcaaatttctggatcgtgatcaatcagtgttgttaaccgcggattgccaaaaatagtggt |
100 |
Q |
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| T |
4050649 |
ttccatcatcttctaatagttctttttcaatagctgcatttcaaatttctggatcgtgatatctcagtgttgttaaccgcggattgccaaaaatagtggt |
4050550 |
T |
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| Q |
101 |
ttattcaaattctgttacaaaacagtgatatagtgccatatacctgctatttgacaatattttggattaaatagcatatggtggaacaataacgannnnn |
200 |
Q |
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| T |
4050549 |
ttgttcaaattctgttacacaacagtgatatagcgccatatacctgctatttgacaatattttggactaaatagcatatggtgaaacaataacgattttt |
4050450 |
T |
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| Q |
201 |
nncaaattccgctacgctatagtctgtagtgctatgctgctgctatatatggccgccactatttgataacattgtgatgcatatttcaaagagacatctt |
300 |
Q |
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| T |
4050449 |
ttcaaattccgctacgctatagtctatagtgctatgctgctgctatatatggccgccactatttaataacattgtgatgcatatttcaaagagacatctt |
4050350 |
T |
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| Q |
301 |
ttctcagctccaaaaatatataagttgcgctattttcatagtatagccaataagcatgcagttactatgattttcattaattctggtttcatctc |
395 |
Q |
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| T |
4050349 |
ttctcagctccaaaaatatacaagttgcgctattttcatagtatagccaataagcatgcagttactatgattttaattaattctggtttcatctc |
4050255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 19391030 - 19390957
Alignment:
| Q |
122 |
acagtgatatagtgcca-tatacctgctatttgacaatattttggattaaatagcatatggtggaacaataacg |
194 |
Q |
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|||||| ||||| |||| |||| |||||||||||||||| |||| | |||||||| ||| ||||||||| |||| |
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| T |
19391030 |
acagtgctatagcgccactataactgctatttgacaatactttgtactaaatagcttattgtggaacaacaacg |
19390957 |
T |
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