View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2772_high_2 (Length: 508)
Name: NF2772_high_2
Description: NF2772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2772_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 14769368 - 14768886
Alignment:
| Q |
18 |
catcttgatttttcagtttcaccgctcatccaaacatacacttgtacc---------atatgatatttcattttcaccactgatcccaacatata--ctt |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
14769368 |
catcttaatttttcagtttcaccgctcatctaaacatatacttgtaccgaatgtaccatatgatatttcattttcaccggtgatcccaacatatatactt |
14769269 |
T |
|
| Q |
107 |
gtataatattaaagattcgttaannnnnnnnnnnnnnnnnnnaaaaagtgaactttatattatggattatttaaaagagtttcaattcaataaatatata |
206 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | |
|
|
| T |
14769268 |
gtacaatattaaagattcgttaattttttttttaa-------aaaaagtgaactttatattatggattatttaaaagagtttcaagttaataattataaa |
14769176 |
T |
|
| Q |
207 |
caaaattaatagactacatgcgtataaaaataattaattattcaactggtcagagtttgatttaacgaaagaagttaaattttcacatcacatcacattg |
306 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14769175 |
caaaattaatagactacatgcttataaaaataattaattattcgactggtcagagtttggtttaacgaaagaagttaaactttcacatcacatcacattg |
14769076 |
T |
|
| Q |
307 |
aaataatgtttaaatcttaggaatggaagtgttcacgtttagtgtttctactgaatagaatctaaggaaaccaaaataatatcctaaaataannnnnnna |
406 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14769075 |
aaataacgtttaaatcttaggaatggaagtgtccacgtttagtgtttctaccgaatagaatctaaggaaaccaaaataatatcctaaaataattttttta |
14768976 |
T |
|
| Q |
407 |
ggaaacacaaaataattggttattcaaaattattattatgaatatcgttgaaaagttctactttgttatttacattatttatcatttttt |
496 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14768975 |
ggaaacacaaaataattggttattcacaattattattatgaatatcgtttaaaagttctactttgttatttacattatttatcttttttt |
14768886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University