View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2772_high_4 (Length: 437)
Name: NF2772_high_4
Description: NF2772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2772_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 30377126 - 30377525
Alignment:
| Q |
1 |
gtggcggtgtgagattaagacattatttttgtcttgactaagagattgactttaggatcataaggttggttagagtcttagagatattattgagatacct |
100 |
Q |
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| T |
30377126 |
gtggcggtgtgagattaagacattatttttgtcttgactaagagattgactttaggatcataaggttggttagag--------atattattgagatacct |
30377217 |
T |
|
| Q |
101 |
ttaggacacgttctcatcattcatggtccttcgaggaaggcacaatgttttgttaatttatgtacacgccaaaatccaaatgaagttttggtggataata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30377218 |
ttaggacacgttctcatcattcatggtccttcgaggaaggcacaatgttttgttaacttatgtacactccaaaatccaaatgaagttttggtggataata |
30377317 |
T |
|
| Q |
201 |
tatgccataca-ttcccacaagatattcgattcaagaagagaaagtacatgtacatgcaaccaaactcaattatcatcaaatcaccaaccaacgtgtgta |
299 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30377318 |
tatgccatacaattcccacaagatattcgattcaagaagagaaagtacatgtacatgcaaccaaactcaattatcatcaaatcaccaaccaacgtttgta |
30377417 |
T |
|
| Q |
300 |
atatgcattgcatgtagcacgtaccatacggcataataatatgtatgtacaccattgtatgaatttgactcagagaaaaatcagtctcctttaatgatat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30377418 |
atatgcattgcatgtagcacgtaccatacggcataataatatgtatgtacaccattgtatgaatttgactcagagaaaaatcagtctcctttaatgatat |
30377517 |
T |
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