View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2772_low_1 (Length: 630)

Name: NF2772_low_1
Description: NF2772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2772_low_1
NF2772_low_1
[»] chr8 (19 HSPs)
chr8 (1-620)||(18396781-18397400)
chr8 (72-620)||(11460875-11461424)
chr8 (1-245)||(11460313-11460557)
chr8 (283-408)||(11460604-11460731)
chr8 (405-488)||(11460723-11460807)
chr8 (436-488)||(28879035-28879087)
chr8 (448-492)||(35168354-35168398)
chr8 (436-489)||(34286620-34286673)
chr8 (456-488)||(10298833-10298865)
chr8 (436-483)||(35453392-35453439)
chr8 (456-486)||(10480026-10480056)
chr8 (452-486)||(30973954-30973988)
chr8 (443-484)||(9781196-9781237)
chr8 (448-489)||(10213701-10213742)
chr8 (448-489)||(10298995-10299036)
chr8 (437-486)||(32975666-32975715)
chr8 (452-489)||(36907735-36907772)
chr8 (456-488)||(11460796-11460828)
chr8 (448-484)||(28280690-28280726)
[»] chr4 (29 HSPs)
chr4 (436-490)||(7148747-7148801)
chr4 (442-489)||(825658-825705)
chr4 (448-491)||(52274189-52274232)
chr4 (448-486)||(28663407-28663445)
chr4 (437-483)||(36740886-36740932)
chr4 (448-489)||(825808-825849)
chr4 (436-489)||(9319162-9319215)
chr4 (452-489)||(23297400-23297437)
chr4 (452-489)||(29877601-29877638)
chr4 (452-489)||(34633361-34633398)
chr4 (456-488)||(43699574-43699606)
chr4 (436-483)||(488441-488488)
chr4 (452-483)||(1374450-1374481)
chr4 (458-489)||(42153067-42153098)
chr4 (436-486)||(2141620-2141670)
chr4 (448-486)||(29615492-29615530)
chr4 (457-487)||(38345730-38345760)
chr4 (448-486)||(54412116-54412154)
chr4 (436-489)||(28074341-28074394)
chr4 (452-485)||(32628747-32628780)
chr4 (452-489)||(35124349-35124386)
chr4 (452-489)||(40699318-40699355)
chr4 (448-485)||(42697422-42697459)
chr4 (448-485)||(48591493-48591530)
chr4 (452-484)||(2702802-2702834)
chr4 (456-484)||(17222977-17223005)
chr4 (452-484)||(42611955-42611987)
chr4 (442-489)||(42697288-42697336)
chr4 (448-484)||(43136686-43136722)
[»] chr5 (22 HSPs)
chr5 (442-489)||(42706772-42706819)
chr5 (436-488)||(28357255-28357307)
chr5 (442-489)||(28625456-28625503)
chr5 (456-489)||(1576779-1576812)
chr5 (456-489)||(1608003-1608036)
chr5 (448-485)||(1942990-1943027)
chr5 (452-484)||(28970165-28970197)
chr5 (452-484)||(41125671-41125703)
chr5 (436-484)||(41534604-41534652)
chr5 (452-487)||(341954-341989)
chr5 (434-489)||(40452533-40452588)
chr5 (452-489)||(2577502-2577539)
chr5 (452-489)||(11163356-11163393)
chr5 (436-489)||(12986930-12986983)
chr5 (456-489)||(22573787-22573820)
chr5 (449-486)||(31637160-31637197)
chr5 (448-485)||(40696981-40697018)
chr5 (452-489)||(42851984-42852021)
chr5 (452-484)||(1372080-1372112)
chr5 (456-488)||(1868989-1869021)
chr5 (456-492)||(13739377-13739413)
chr5 (456-484)||(40697154-40697182)
[»] chr6 (8 HSPs)
chr6 (436-489)||(2034286-2034339)
chr6 (436-489)||(21025284-21025337)
chr6 (434-489)||(2027231-2027286)
chr6 (442-489)||(10755343-10755390)
chr6 (448-484)||(13429443-13429479)
chr6 (436-489)||(10874098-10874151)
chr6 (448-489)||(12817240-12817281)
chr6 (452-489)||(25430685-25430722)
[»] chr7 (15 HSPs)
chr7 (436-484)||(47511024-47511072)
chr7 (436-484)||(29378626-29378674)
chr7 (437-488)||(17944504-17944555)
chr7 (452-489)||(40629503-40629540)
chr7 (452-484)||(18837189-18837221)
chr7 (435-489)||(35713559-35713613)
chr7 (456-489)||(25908442-25908475)
chr7 (456-489)||(40629338-40629371)
chr7 (448-489)||(46743926-46743967)
chr7 (453-485)||(30181516-30181548)
chr7 (437-489)||(33204861-33204913)
chr7 (456-484)||(33287985-33288013)
chr7 (452-484)||(38372525-38372557)
chr7 (456-488)||(38372706-38372738)
chr7 (448-484)||(43818946-43818982)
[»] chr1 (15 HSPs)
chr1 (448-489)||(48819275-48819316)
chr1 (442-489)||(1005316-1005363)
chr1 (442-485)||(37431146-37431189)
chr1 (442-484)||(45267446-45267488)
chr1 (452-489)||(391130-391167)
chr1 (448-485)||(28870204-28870241)
chr1 (448-489)||(37329481-37329522)
chr1 (442-482)||(26936842-26936882)
chr1 (442-486)||(36178515-36178559)
chr1 (448-488)||(38781050-38781090)
chr1 (456-485)||(1565284-1565313)
chr1 (452-489)||(26946192-26946229)
chr1 (456-489)||(41196615-41196648)
chr1 (448-484)||(38781204-38781239)
chr1 (456-484)||(47413520-47413548)
[»] chr3 (15 HSPs)
chr3 (436-484)||(29270464-29270512)
chr3 (442-483)||(23555527-23555568)
chr3 (436-483)||(43079991-43080038)
chr3 (448-487)||(45331364-45331403)
chr3 (450-489)||(48597938-48597977)
chr3 (452-486)||(4974276-4974310)
chr3 (452-490)||(34707800-34707838)
chr3 (451-489)||(50540517-50540555)
chr3 (456-490)||(53261838-53261872)
chr3 (436-489)||(3870283-3870336)
chr3 (457-486)||(23555449-23555478)
chr3 (452-489)||(29270323-29270360)
chr3 (453-489)||(15444056-15444092)
chr3 (449-489)||(35480307-35480347)
chr3 (448-484)||(52021227-52021263)
[»] chr2 (16 HSPs)
chr2 (448-489)||(9140649-9140690)
chr2 (452-485)||(12223980-12224013)
chr2 (452-489)||(13097878-13097915)
chr2 (448-489)||(18276907-18276948)
chr2 (436-489)||(37419893-37419946)
chr2 (442-486)||(17317158-17317202)
chr2 (452-488)||(38215986-38216022)
chr2 (443-486)||(12238547-12238590)
chr2 (442-484)||(887393-887435)
chr2 (448-489)||(7028150-7028191)
chr2 (456-489)||(33321217-33321250)
chr2 (448-485)||(43796910-43796947)
chr2 (452-484)||(2790158-2790190)
chr2 (456-492)||(4016034-4016069)
chr2 (452-488)||(4090452-4090488)
chr2 (456-488)||(37409791-37409823)
[»] scaffold0022 (1 HSPs)
scaffold0022 (444-483)||(89318-89357)
[»] scaffold0071 (1 HSPs)
scaffold0071 (453-489)||(18099-18135)
[»] scaffold0004 (1 HSPs)
scaffold0004 (443-483)||(227688-227728)


Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 18397400 - 18396781
Alignment:
Q  1 cacactcaagattcaataaaactaatgaaggaccttagagatcaccctacctcgagagtgttttgtctgagcaaacaacaaaacatcctctgcgaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18397400 cacactcaagattcaataaaactaatgaaggaccttagagatcaccctacctcgagagcgttttgtctgagcaaacaacaaaacatcctctgcgaaaaat 18397301  T
Q  101 aagtgagatagtgggtgaccctctagcaatcctcgatgacaaccgtcccttccctccataggtttggagatcatgttgccatgtctctccatacaaagga 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18397300 aagtgagacagtgggtgaccctctagcaatcctcgatgacaaccgtcccttccctccataggtttgaagatcatgttgccatgtctctccatacaaagga 18397201  T
Q  201 ccatgcaagtttctaaactactttggagtctttctatcttaatctnnnnnnnnnn-ttgtgtaaagctaatgtaatnnnnnnngattctttatctctgta 299  Q
    || ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||       ||||| |||||||||||    
T  18397200 ccgtgcaagtttctaaactactttggagtctttctatcttaatctaaaaaaaaatattgtgtaaagctaatgtaataaaaaa-gattcattatctctgta 18397102  T
Q  300 tggtttagtgatcaacaccattatttttaactactcttaggtgtagtttgattgggctagtgtaatacacaattatgttaaagttttctccaagttatat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18397101 tggtttagtgatcaacaccattatttttaactactcttaggtgtagtttgattgggctagtgtaatacacaattatcttaaagttttctccaagttatat 18397002  T
Q  400 gcccgtttgagcttataaaaaatagcttattatttgcataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcctatctcgtgt 499  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18397001 gcccgtttgagcttataaaaaatagcttattatttgcataaaagcttttttatttgcataagctcaaaaataagccaatccaaacgggcctatctcgtgt 18396902  T
Q  500 ccaggaatcaggattcagtcacgaacaagctaaagttcaagctaggatgaaaatgaaattatcatacatatcaaattggacagtagtagctataatgcta 599  Q
    | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396901 ctaggaatcagaattcggtcacgaacaagctaaagttcaagctaggatgaaaatgaaattatcatacatatcaaattggacagtagtagctataatgcta 18396802  T
Q  600 tataacttaatcatcattcat 620  Q
    |||||||||||||||||||||    
T  18396801 tataacttaatcatcattcat 18396781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 72 - 620
Target Start/End: Original strand, 11460875 - 11461424
Alignment:
Q  72 caaacaacaaaacatcctctgcgaaaaataagtgagatagtgggtgaccctctagcaatcctcgatgacaaccgtcccttccctccataggtttggagat 171  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  11460875 caaacaacaaaacatcctctgcgaaaaataagtgagacagtgggtgaccctctaacaatcctcgacgacaaccatcccttccctccataggtttggagat 11460974  T
Q  172 catgttgccatgtctctccatacaaaggaccatgcaagtttctaaactactttggagtctttctatcttaatctnnnnnnnnnn--ttgtgtaaagctaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  11460975 catgttgccatgtctctccatacaaaggaccatgcaagtttctaaactactttggagtctttctatcttaatctaaaaaaaaatatttgtgtaaagctaa 11461074  T
Q  270 tgtaatnnnnnnngattctttatctctgtatggtttagtgatcaacaccattatttttaactactcttaggtgtagtttgattgggctagtgtaatacac 369  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11461075 tgtaataaaaaa-gattctttatctctgtatggtttagtgatcaacaccattatttttaactactcttaggtgtagtttgattgggctagtgtaatacac 11461173  T
Q  370 aattatgttaaagttttctccaagttatatgcccgtttgagcttataaaaaatagcttattatttgcataagagcttttttatttgcataagctcaaaaa 469  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  11461174 aattatgttaaagttttctccgagttatatgcccgtttgagcttataaaaaatagcttattatttgcataaaagcttttttatttgcataaggtcaaaaa 11461273  T
Q  470 taagccaatccaaacgggcctatctcgtgtccaggaatcaggattcagtcacgaacaagctaaagttcaagctaggatgaaaatgaaattatcatacata 569  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11461274 taagccaatccaaacgggcctttctcgtgtccaggaatcaggattcagtcacgaacaagctaaagttcaagctaggatgaaaatgaaattatcatacata 11461373  T
Q  570 tcaaattggacagtagtagctataatgctatataacttaatcatcattcat 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11461374 tcaaattggacagtagtagctataatgctatataacttaatcatcattcat 11461424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11460313 - 11460557
Alignment:
Q  1 cacactcaagattcaataaaactaatgaaggaccttagagatcaccctacctcgagagtgttttgtctgagcaaacaacaaaacatcctctgcgaaaaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11460313 cacactcaagattcgataaaactaatgaaggaccttagagatcaccctacctcgagagcgttttgtctgagaaaacaacaaaacatcctctgcgaaaaat 11460412  T
Q  101 aagtgagatagtgggtgaccctctagcaatcctcgatgacaaccgtcccttccctccataggtttggagatcatgttgccatgtctctccatacaaagga 200  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11460413 aagtgagacagtgggtgaccctctagcaatcctcgacgacaaccatccctgccttccataggtttggagatcatgttgccatggctctccatacaaagga 11460512  T
Q  201 ccatgcaagtttctaaactactttggagtctttctatcttaatct 245  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  11460513 ccatgcaagtttctaaactactttcgagcctttctatcttaatct 11460557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 283 - 408
Target Start/End: Original strand, 11460604 - 11460731
Alignment:
Q  283 gattctttatctctgtatggtttagtgatcaacac--cattatttttaactactcttaggtgtagtttgattgggctagtgtaatacacaattatgttaa 380  Q
    |||||| |||||||||||||| ||||| ||||||   |||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||    
T  11460604 gattctatatctctgtatggtatagtgttcaacatttcattatttttaactactcttgggtgtattttgattgggtttgtgtaatacacaattatgttaa 11460703  T
Q  381 agttttctccaagttatatgcccgtttg 408  Q
    |||||||||| |||||||||||||||||    
T  11460704 agttttctccgagttatatgcccgtttg 11460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 11460807 - 11460723
Alignment:
Q  405 tttgagcttataaaaaatagcttatt-atttgcataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||  |||||||||||||    
T  11460807 tttgagcttatgaaaaatagcttatttatttgcataaaagcttttttatttgcataagatcaaaaataagtgaatccaaacgggc 11460723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 28879087 - 28879035
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  28879087 cataaaagcttatttatttgcataagctcaaaaataagccaattcaaacgggc 28879035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 35168398 - 35168354
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcctat 492  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  35168398 tttatttacataagctcaaaaataagccaatccaaacgggcctat 35168354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 34286620 - 34286673
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| ||||||| |||||||||||||||||| |||||||||| ||||    
T  34286620 cataaaagcttatttatttacataagctcaaaaataagtcaatccaaacaggcc 34286673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 10298865 - 10298833
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggc 488  Q
    |||||||||||||||||||||||||||||||||    
T  10298865 cataagctcaaaaataagccaatccaaacgggc 10298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 35453439 - 35453392
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| ||||    
T  35453439 cataaaagcttatttatttgcataagctaaaaaataagccaattcaaa 35453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 486
Target Start/End: Complemental strand, 10480056 - 10480026
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgg 486  Q
    |||||||||||||||||||||||||||||||    
T  10480056 cataagctcaaaaataagccaatccaaacgg 10480026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 486
Target Start/End: Complemental strand, 30973988 - 30973954
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgg 486  Q
    ||||||||||||| |||||||||||||||||||||    
T  30973988 tttgcataagctctaaaataagccaatccaaacgg 30973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 9781237 - 9781196
Alignment:
Q  443 gcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    |||| ||||||||||||||||| |||||||| ||||||||||    
T  9781237 gcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 10213742 - 10213701
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||| | ||||||||||||||||| |||||    
T  10213742 tttatttgcataagcttagaaataagccaatccaaatgggcc 10213701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 10298995 - 10299036
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||| ||||| || |||||||||||||||||||    
T  10298995 tttatttgcataaactcaacaagaagccaatccaaacgggcc 10299036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 32975715 - 32975666
Alignment:
Q  437 ataagagcttttttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    |||| ||||| ||||||||||||||||||||| ||| | |||||||||||    
T  32975715 ataaaagcttatttatttgcataagctcaaaagtaaacaaatccaaacgg 32975666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 36907735 - 36907772
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  36907735 tttgcataagctctaaaataagccaatccaaatgggcc 36907772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 11460796 - 11460828
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggc 488  Q
    |||||||||||||||||| ||||||||||||||    
T  11460796 cataagctcaaaaataagtcaatccaaacgggc 11460828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Complemental strand, 28280726 - 28280690
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  28280726 tttatttgcataagctctaaaataagctaatccaaac 28280690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 7148801 - 7148747
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcct 490  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7148801 cataaaagcttatttatttgcataagctcaaaaataagccaatccaaacgggcct 7148747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 825705 - 825658
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  825705 agcttatttatttgcataagctcaaaaagaagccaatccaaacaggcc 825658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 491
Target Start/End: Original strand, 52274189 - 52274232
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggccta 491  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  52274189 tttatttgcataagctcaaaaataagccaattcaaacaggccta 52274232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 28663445 - 28663407
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  28663445 tttatttgcataagctcaaaaataagtcaatccaaacgg 28663407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 36740932 - 36740886
Alignment:
Q  437 ataagagcttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||    
T  36740932 ataaaagcttatttatttgcataagctcaaaaataagtcaatccaaa 36740886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 825808 - 825849
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  825808 tttatttgcataagctaaaaaattagccaatccaaacgggcc 825849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 9319162 - 9319215
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| ||||||| |||||||| ||||||||||||| |||||||||||    
T  9319162 cataaaagcttatttatttacataagctaaaaaataagccaaaccaaacgggcc 9319215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 23297437 - 23297400
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  23297437 tttgcataagctcaaaaataagccaatccaaacaggcc 23297400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 29877638 - 29877601
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29877638 tttgcataagctcaaaaataagccaatccaaacaggcc 29877601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 34633398 - 34633361
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||| |||||||||||||||||||||||||    
T  34633398 tttgcataagctaaaaaataagccaatccaaacgggcc 34633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 43699574 - 43699606
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggc 488  Q
    |||||||||||||||||||||||||||||||||    
T  43699574 cataagctcaaaaataagccaatccaaacgggc 43699606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 488441 - 488488
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    ||||| |||||  ||||||||||||||||||||||||| |||||||||    
T  488441 cataaaagcttacttatttgcataagctcaaaaataagtcaatccaaa 488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 483
Target Start/End: Original strand, 1374450 - 1374481
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaa 483  Q
    ||||||||||||||||||||||||||||||||    
T  1374450 tttgcataagctcaaaaataagccaatccaaa 1374481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 489
Target Start/End: Complemental strand, 42153098 - 42153067
Alignment:
Q  458 taagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||    
T  42153098 taagctcaaaaataagccaatccaaacgggcc 42153067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 2141670 - 2141620
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    ||||| ||||| ||||||||||||||||| ||||||||| ||| |||||||    
T  2141670 cataaaagcttatttatttgcataagctctaaaataagctaattcaaacgg 2141620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 29615492 - 29615530
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  29615492 tttatttgcataagctgaaaaataagcgaatccaaacgg 29615530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 487
Target Start/End: Complemental strand, 38345760 - 38345730
Alignment:
Q  457 ataagctcaaaaataagccaatccaaacggg 487  Q
    |||||||||||||||||||||||||||||||    
T  38345760 ataagctcaaaaataagccaatccaaacggg 38345730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 54412116 - 54412154
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  54412116 tttatttgcataagttaaaaaataagccaatccaaacgg 54412154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 28074394 - 28074341
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| |||||||||||||||  ||||||||| ||||||||| |||||    
T  28074394 cataaaagcttatttatttgcataagcgaaaaaataagtcaatccaaatgggcc 28074341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 485
Target Start/End: Complemental strand, 32628780 - 32628747
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacg 485  Q
    |||||||||||||||||||||| |||||||||||    
T  32628780 tttgcataagctcaaaaataagacaatccaaacg 32628747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 35124386 - 35124349
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  35124386 tttgcataagctcaaaaataagtcaatccaaatgggcc 35124349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 40699355 - 40699318
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  40699355 tttgcataagctcaataataagccaatccagacgggcc 40699318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 42697422 - 42697459
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  42697422 tttatttgcataagctcaaacataaaccaatccaaacg 42697459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 48591493 - 48591530
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  48591493 tttatttgcataagctcagaaataagccaatcctaacg 48591530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 2702802 - 2702834
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||||||||||| |||||||||||||||||||    
T  2702802 tttgcataagctctaaaataagccaatccaaac 2702834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 484
Target Start/End: Original strand, 17222977 - 17223005
Alignment:
Q  456 cataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||    
T  17222977 cataagctcaaaaataagccaatccaaac 17223005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 42611955 - 42611987
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||| ||||||||||||||||||||    
T  42611955 tttgcataagctaaaaaataagccaatccaaac 42611987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 42697336 - 42697288
Alignment:
Q  442 agcttttttatttgcataagctcaaaaa-taagccaatccaaacgggcc 489  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||| ||||    
T  42697336 agcttatttatttgcataagctaaaaaaataagccaatccaaacaggcc 42697288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 43136686 - 43136722
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  43136686 tttattcgcataagctcaaaaataagtcaatccaaac 43136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 42706819 - 42706772
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42706819 agcttatttatttgcataagctcaaaaataagccaatccaaacgggcc 42706772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 488
Target Start/End: Original strand, 28357255 - 28357307
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| |||||||||    
T  28357255 cataaaagcttatttatttgcataagctaaaaaataagccaatacaaacgggc 28357307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 28625503 - 28625456
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  28625503 agcttatttatttgcataagctaaaaaataagtcaatccaaacgggcc 28625456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 1576779 - 1576812
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||||    
T  1576779 cataagctcaaaaataagccaatccaaacgggcc 1576812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 456 - 489
Target Start/End: Complemental strand, 1608036 - 1608003
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||||    
T  1608036 cataagctcaaaaataagccaatccaaacgggcc 1608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 1943027 - 1942990
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1943027 tttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 28970165 - 28970197
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||||||    
T  28970165 tttgcataagctcaaaaataagccaatccaaac 28970197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 41125703 - 41125671
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||||||    
T  41125703 tttgcataagctcaaaaataagccaatccaaac 41125671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 41534652 - 41534604
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||| ||||| ||||||||||||| || ||||||||||||||||||||    
T  41534652 cataaaagcttatttatttgcataatctgaaaaataagccaatccaaac 41534604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 487
Target Start/End: Complemental strand, 341989 - 341954
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacggg 487  Q
    |||||||||||||||||||||||| |||||||||||    
T  341989 tttgcataagctcaaaaataagccgatccaaacggg 341954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 40452533 - 40452588
Alignment:
Q  434 tgcataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||| ||||| ||  ||||||||||||| |||||||||||||| |||||||||    
T  40452533 tgcataaaagcttattcctttgcataagctcgaaaataagccaatcgaaacgggcc 40452588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 2577502 - 2577539
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  2577502 tttggataagctaaaaaataagccaatccaaacgggcc 2577539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 11163356 - 11163393
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  11163356 tttgcataagctaaaaaataagtcaatccaaacgggcc 11163393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 12986983 - 12986930
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| ||||||||||| |||| |||||| |||| |||||||||||||    
T  12986983 cataaaagcttatttatttgcattagctaaaaaattagcctatccaaacgggcc 12986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 22573787 - 22573820
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||||||||| |||||    
T  22573787 cataagctcaaaaataagccaatccaaatgggcc 22573820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Original strand, 31637160 - 31637197
Alignment:
Q  449 ttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  31637160 ttatttgcataagctcataaataagtcaatccaaacgg 31637197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 40697018 - 40696981
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  40697018 tttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 42852021 - 42851984
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  42852021 tttgcataagcccaaaaataagccaatccgaacgggcc 42851984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 1372080 - 1372112
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||| ||||||||||    
T  1372080 tttgcataagctcaaaaataagtcaatccaaac 1372112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 1868989 - 1869021
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||||||| |||||||||||||||||||||||    
T  1868989 cataagctcgaaaataagccaatccaaacgggc 1869021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 13739377 - 13739413
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcctat 492  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  13739377 cataaactcaaaaataagccaatccaaacggccctat 13739413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 484
Target Start/End: Original strand, 40697154 - 40697182
Alignment:
Q  456 cataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||    
T  40697154 cataagctcaaaaataagccaatccaaac 40697182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 2034286 - 2034339
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  2034286 cataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacgggcc 2034339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 21025284 - 21025337
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  21025284 cataaaagcttatttatttgcataagctaaaaaattagccaatccaaacgggcc 21025337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 2027231 - 2027286
Alignment:
Q  434 tgcataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||| ||||| ||||||||||||||||  |||| |||||||||||||||||||    
T  2027231 tgcataaaagcttatttatttgcataagctggaaaacaagccaatccaaacgggcc 2027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 10755343 - 10755390
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  10755343 agcttatttatttgcataagctaaaaaataagccaatccaaacaggcc 10755390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 484
Target Start/End: Complemental strand, 13429479 - 13429443
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13429479 tttatttgcataagctcaaaaatatgccaatccaaac 13429443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 10874098 - 10874151
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| |||||||||||||||| ||||||||| || ||||||| ||||    
T  10874098 cataaaagcttatttatttgcataagctaaaaaataagtcattccaaacaggcc 10874151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 12817240 - 12817281
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||| ||||||| |||||||||||| ||||||||||||    
T  12817240 tttatttgtataagcttaaaaataagccagtccaaacgggcc 12817281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 25430722 - 25430685
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  25430722 tttgcataagctacaaaataagccaatccaaacgggcc 25430685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 47511072 - 47511024
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  47511072 cataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 29378674 - 29378626
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  29378674 cataaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 17944555 - 17944504
Alignment:
Q  437 ataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  17944555 ataaaagcttatttatttgcataagctcaaaaattagccaatccaaatgggc 17944504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 40629503 - 40629540
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  40629503 tttgcataagctcaaaaataagccaatccaaacaggcc 40629540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 18837221 - 18837189
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||||||    
T  18837221 tttgcataagctcaaaaataagccaatccaaac 18837189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 35713613 - 35713559
Alignment:
Q  435 gcataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||| || || |||||||||||||||| || ||||||||||||||||| ||||    
T  35713613 gcataaaaggttatttatttgcataagcttaagaataagccaatccaaacaggcc 35713559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 25908442 - 25908475
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||||||||||||||||||||||||||    
T  25908442 cataacctcaaaaataagccaatccaaacgggcc 25908475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Complemental strand, 40629371 - 40629338
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||| ||||    
T  40629371 cataagctcaaaaataagccaatccaaacaggcc 40629338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 46743967 - 46743926
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||    
T  46743967 tttatttgcatgagctcaaaagtaagccaatccaaacaggcc 46743926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 30181548 - 30181516
Alignment:
Q  453 ttgcataagctcaaaaataagccaatccaaacg 485  Q
    ||||||||||||||||||||| |||||||||||    
T  30181548 ttgcataagctcaaaaataagtcaatccaaacg 30181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 489
Target Start/End: Complemental strand, 33204913 - 33204861
Alignment:
Q  437 ataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||| ||||| |||||||||||||||||||||||||  | ||| |||||||||    
T  33204913 ataaaagcttatttatttgcataagctcaaaaataaatcgatcgaaacgggcc 33204861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 484
Target Start/End: Complemental strand, 33288013 - 33287985
Alignment:
Q  456 cataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||    
T  33288013 cataagctcaaaaataagccaatccaaac 33287985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 38372557 - 38372525
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||| ||||||||||    
T  38372557 tttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 38372706 - 38372738
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||||||||||||||| |||||||||||||||    
T  38372706 cataagctcaaaaataacccaatccaaacgggc 38372738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 43818946 - 43818982
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  43818946 tttatttgcataagctctaaaataagctaatccaaac 43818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 48819316 - 48819275
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  48819316 tttatttgcataagctcaaaaataagccaatccaaatgggcc 48819275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 1005363 - 1005316
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  1005363 agcttatttatttgcataagcttaaaaataagccaattcaaacgggcc 1005316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 485
Target Start/End: Complemental strand, 37431189 - 37431146
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  37431189 agcttatttatttgcacaagctcaaaaataagccaatccaaacg 37431146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 45267488 - 45267446
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  45267488 agcttatttatttgcataagctcaaaaataagtcaatccaaac 45267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 391167 - 391130
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  391167 tttgcataacctcaaaaataagccaatccaaacgggcc 391130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 28870241 - 28870204
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28870241 tttatttgcataagctcaaaaataagccaatctaaacg 28870204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 489
Target Start/End: Original strand, 37329481 - 37329522
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  37329481 tttatttgcataatctcaaaaataagcctatccaaacgggcc 37329522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 482
Target Start/End: Complemental strand, 26936882 - 26936842
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaa 482  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  26936882 agcttatttatttgcataagctaaaaaataagccaatccaa 26936842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 36178559 - 36178515
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||    
T  36178559 agcttatttatttgcataagctcaaaagtaagtcaatccaaacgg 36178515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 488
Target Start/End: Complemental strand, 38781090 - 38781050
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  38781090 tttatttgcataagctcaaaaataagccaatcaaaatgggc 38781050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 485
Target Start/End: Complemental strand, 1565313 - 1565284
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacg 485  Q
    ||||||||||||||||||||||||||||||    
T  1565313 cataagctcaaaaataagccaatccaaacg 1565284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 26946192 - 26946229
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  26946192 tttgcataagctcaaaaataagtcaatccaaatgggcc 26946229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Complemental strand, 41196648 - 41196615
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||||||||| |||||    
T  41196648 cataagctcaaaaataagccaatccaaatgggcc 41196615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 38781204 - 38781239
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38781204 tttatttgcataa-ctcaaaaataagccaatccaaac 38781239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 484
Target Start/End: Original strand, 47413520 - 47413548
Alignment:
Q  456 cataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||||||    
T  47413520 cataagctcaaaaataagccaatccaaac 47413548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 29270464 - 29270512
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||    
T  29270464 cataaaagcttatttatttgcataagctaaaaaataagccaatccaaac 29270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 23555527 - 23555568
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  23555527 agcttatttatttgcataagctcaaaaataagccaatacaaa 23555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 43079991 - 43080038
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    ||||| ||||| |||||||||||||||| ||||||||| |||||||||    
T  43079991 cataaaagcttatttatttgcataagctaaaaaataagacaatccaaa 43080038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 45331364 - 45331403
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacggg 487  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  45331364 tttatttacataagctaaaaaataagccaatccaaacggg 45331403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Original strand, 48597938 - 48597977
Alignment:
Q  450 tatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  48597938 tatttgcataggctaaaaaataagccaatccaaacgggcc 48597977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 486
Target Start/End: Complemental strand, 4974310 - 4974276
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgg 486  Q
    ||||||||||||| |||||||||||||||||||||    
T  4974310 tttgcataagctctaaaataagccaatccaaacgg 4974276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 490
Target Start/End: Original strand, 34707800 - 34707838
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcct 490  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  34707800 tttgcataagctcaaaaataagtcaatccaaacaggcct 34707838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 50540555 - 50540517
Alignment:
Q  451 atttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  50540555 atttgcataagctcaaaaataagacaatccaaaggggcc 50540517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 53261838 - 53261872
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcct 490  Q
    |||||||||||||||||||||||||||| ||||||    
T  53261838 cataagctcaaaaataagccaatccaaatgggcct 53261872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 3870283 - 3870336
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| ||| ||||||||||||| | |||||||||||||||| |||||    
T  3870283 cataaaagcttatttttttgcataagctcgataataagccaatccaaatgggcc 3870336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 486
Target Start/End: Complemental strand, 23555478 - 23555449
Alignment:
Q  457 ataagctcaaaaataagccaatccaaacgg 486  Q
    ||||||||||||||||||||||||||||||    
T  23555478 ataagctcaaaaataagccaatccaaacgg 23555449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 29270360 - 29270323
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  29270360 tttgcataagctcaaaaataagtcaatccaaacaggcc 29270323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 15444056 - 15444092
Alignment:
Q  453 ttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  15444056 ttgcataagctcaaaaataagtcaatccaatcgggcc 15444092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 35480347 - 35480307
Alignment:
Q  449 ttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||| |||||||||||||||||| |||||||||| ||||    
T  35480347 ttattttcataagctcaaaaataagtcaatccaaacaggcc 35480307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Complemental strand, 52021263 - 52021227
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||| |||||| |||||||||||||    
T  52021263 tttatttgcataagctaaaaaatgagccaatccaaac 52021227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 9140690 - 9140649
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  9140690 tttatatgcataagctcaaaaataagtcaatccaaacgggcc 9140649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 485
Target Start/End: Original strand, 12223980 - 12224013
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacg 485  Q
    ||||||||||||||||||||||||||||||||||    
T  12223980 tttgcataagctcaaaaataagccaatccaaacg 12224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 13097915 - 13097878
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  13097915 tttgcataagctcaaaaataagccaatccaaacaggcc 13097878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 18276948 - 18276907
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  18276948 tttatttgcataagctcaaaaataagtcaatccaagcgggcc 18276907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 37419946 - 37419893
Alignment:
Q  436 cataagagcttttttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||| ||||| ||||||||||||||||||||| |||| ||||||||| |||||    
T  37419946 cataaaagcttatttatttgcataagctcaaaattaagtcaatccaaatgggcc 37419893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 17317202 - 17317158
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  17317202 agcttatttatttacataagctcaaaaataagtcaatccaaacgg 17317158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 38216022 - 38215986
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38216022 tttgcataagctcaaaaataagtcaatccaaacgggc 38215986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 12238547 - 12238590
Alignment:
Q  443 gcttttttatttgcataagctcaaaaataagccaatccaaacgg 486  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||    
T  12238547 gcttatttatttgcataagctctaaaataagccaatcccaacgg 12238590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 887435 - 887393
Alignment:
Q  442 agcttttttatttgcataagctcaaaaataagccaatccaaac 484  Q
    ||||| |||||||||||||||||| |||||| |||||||||||    
T  887435 agcttatttatttgcataagctcagaaataatccaatccaaac 887393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 7028191 - 7028150
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||||||  |||| ||||||||||    
T  7028191 tttatttgcataagctcaaaaataaaacaatacaaacgggcc 7028150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Complemental strand, 33321250 - 33321217
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcc 489  Q
    |||||||||||||||||||||||||||| |||||    
T  33321250 cataagctcaaaaataagccaatccaaatgggcc 33321217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 43796947 - 43796910
Alignment:
Q  448 tttatttgcataagctcaaaaataagccaatccaaacg 485  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  43796947 tttatttacataagctctaaaataagccaatccaaacg 43796910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 484
Target Start/End: Original strand, 2790158 - 2790190
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaac 484  Q
    |||||||||||||||||||||||||| ||||||    
T  2790158 tttgcataagctcaaaaataagccaacccaaac 2790190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 4016069 - 4016034
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggcctat 492  Q
    ||||||||||||| |||||||||||||||||||||||    
T  4016069 cataagctcaaaa-taagccaatccaaacgggcctat 4016034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 488
Target Start/End: Complemental strand, 4090488 - 4090452
Alignment:
Q  452 tttgcataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||||||||||||||||||||||||| || ||||||    
T  4090488 tttgcataagctcaaaaataagccaattcagacgggc 4090452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 37409791 - 37409823
Alignment:
Q  456 cataagctcaaaaataagccaatccaaacgggc 488  Q
    ||||||||||||||||||||| |||||||||||    
T  37409791 cataagctcaaaaataagccagtccaaacgggc 37409823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 89318 - 89357
Alignment:
Q  444 cttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  89318 cttttttatttgcataagcttaaaaataagtcaatccaaa 89357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 18135 - 18099
Alignment:
Q  453 ttgcataagctcaaaaataagccaatccaaacgggcc 489  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  18135 ttgcataagctcaaaaataagtcaatccaatcgggcc 18099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 227728 - 227688
Alignment:
Q  443 gcttttttatttgcataagctcaaaaataagccaatccaaa 483  Q
    |||| |||||| |||||||||| ||||||||||||||||||    
T  227728 gcttatttattcgcataagctctaaaataagccaatccaaa 227688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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