View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2772_low_5 (Length: 288)

Name: NF2772_low_5
Description: NF2772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2772_low_5
NF2772_low_5
[»] chr2 (10 HSPs)
chr2 (83-288)||(44280596-44280801)
chr2 (77-288)||(36527303-36527515)
chr2 (83-288)||(14383462-14383667)
chr2 (232-288)||(43022172-43022228)
chr2 (249-288)||(17928747-17928786)
chr2 (249-288)||(22349444-22349483)
chr2 (249-288)||(39490613-39490652)
chr2 (250-288)||(5144920-5144958)
chr2 (166-220)||(22349253-22349307)
chr2 (251-288)||(17486282-17486319)
[»] chr3 (27 HSPs)
chr3 (81-288)||(4046608-4046813)
chr3 (78-288)||(51998617-51998824)
chr3 (83-288)||(50734506-50734712)
chr3 (83-288)||(50778143-50778349)
chr3 (152-288)||(37182522-37182658)
chr3 (133-288)||(29702145-29702300)
chr3 (175-288)||(41183750-41183863)
chr3 (233-288)||(4873696-4873751)
chr3 (233-288)||(33187638-33187693)
chr3 (233-288)||(42564434-42564489)
chr3 (204-288)||(36177982-36178066)
chr3 (204-288)||(51305047-51305131)
chr3 (249-288)||(6044874-6044913)
chr3 (233-288)||(6833102-6833157)
chr3 (249-288)||(10424204-10424243)
chr3 (249-288)||(32119979-32120018)
chr3 (249-288)||(44084797-44084836)
chr3 (250-288)||(12975313-12975351)
chr3 (250-288)||(48886378-48886416)
chr3 (250-288)||(51999618-51999656)
chr3 (251-288)||(31169823-31169860)
chr3 (252-288)||(11908520-11908556)
chr3 (166-228)||(42564605-42564667)
chr3 (247-288)||(7008599-7008640)
chr3 (166-223)||(10381108-10381165)
chr3 (166-218)||(6044683-6044735)
chr3 (249-285)||(33795084-33795120)
[»] chr5 (17 HSPs)
chr5 (93-288)||(23648455-23648649)
chr5 (93-288)||(23809923-23810117)
chr5 (81-288)||(13592307-13592503)
chr5 (133-288)||(7651464-7651618)
chr5 (93-234)||(29615765-29615904)
chr5 (133-288)||(31007830-31007983)
chr5 (232-288)||(29616013-29616069)
chr5 (182-288)||(39239032-39239138)
chr5 (233-288)||(42804323-42804378)
chr5 (249-288)||(19241798-19241837)
chr5 (250-288)||(3455308-3455346)
chr5 (182-288)||(13479069-13479175)
chr5 (250-288)||(25670361-25670399)
chr5 (249-288)||(39008993-39009032)
chr5 (250-288)||(32363006-32363044)
chr5 (133-226)||(42804114-42804205)
chr5 (252-288)||(23090021-23090057)
[»] chr1 (15 HSPs)
chr1 (81-288)||(51493846-51494054)
chr1 (80-288)||(45622903-45623112)
chr1 (83-288)||(29919851-29920057)
chr1 (83-288)||(37690673-37690879)
chr1 (83-288)||(14097178-14097382)
chr1 (233-288)||(47297125-47297180)
chr1 (233-288)||(17675848-17675903)
chr1 (233-288)||(30878163-30878218)
chr1 (249-288)||(31159912-31159951)
chr1 (249-288)||(48384720-48384759)
chr1 (175-236)||(31160076-31160137)
chr1 (250-288)||(29524385-29524423)
chr1 (250-288)||(45455453-45455491)
chr1 (250-286)||(45363964-45364000)
chr1 (166-218)||(48384529-48384581)
[»] chr8 (14 HSPs)
chr8 (81-288)||(45100398-45100606)
chr8 (93-288)||(42860407-42860596)
chr8 (233-288)||(15057071-15057126)
chr8 (133-235)||(15057235-15057335)
chr8 (182-288)||(26245115-26245221)
chr8 (182-288)||(40284092-40284198)
chr8 (156-235)||(43524638-43524716)
chr8 (249-288)||(44150370-44150409)
chr8 (250-288)||(44503753-44503791)
chr8 (249-288)||(13783737-13783776)
chr8 (249-288)||(29732170-29732209)
chr8 (93-128)||(43524609-43524644)
chr8 (250-288)||(13947921-13947959)
chr8 (250-288)||(31129003-31129041)
[»] chr4 (27 HSPs)
chr4 (79-288)||(52773376-52773584)
chr4 (85-288)||(55549436-55549640)
chr4 (139-286)||(16021333-16021478)
chr4 (133-288)||(38174026-38174180)
chr4 (133-288)||(52018133-52018284)
chr4 (1-79)||(4445044-4445120)
chr4 (152-235)||(13114102-13114182)
chr4 (233-288)||(33077397-33077452)
chr4 (182-288)||(27864395-27864501)
chr4 (182-288)||(19273400-19273506)
chr4 (182-288)||(35809878-35809984)
chr4 (133-224)||(33077208-33077296)
chr4 (249-288)||(3529802-3529841)
chr4 (249-288)||(8995244-8995283)
chr4 (249-288)||(18468907-18468946)
chr4 (249-288)||(34198800-34198839)
chr4 (249-288)||(40721495-40721534)
chr4 (250-288)||(33609442-33609480)
chr4 (250-288)||(48403456-48403494)
chr4 (166-223)||(34198607-34198664)
chr4 (166-223)||(40721670-40721727)
chr4 (152-236)||(34462883-34462967)
chr4 (182-288)||(13093649-13093755)
chr4 (232-274)||(13114023-13114065)
chr4 (250-288)||(33523864-33523902)
chr4 (250-288)||(53347244-53347282)
chr4 (166-218)||(8995422-8995474)
[»] chr7 (15 HSPs)
chr7 (152-288)||(30720605-30720743)
chr7 (233-288)||(33508139-33508194)
chr7 (133-235)||(40300004-40300104)
chr7 (233-285)||(40300168-40300220)
chr7 (182-288)||(45548870-45548976)
chr7 (133-235)||(22660514-22660613)
chr7 (232-288)||(42882079-42882135)
chr7 (233-288)||(22660351-22660405)
chr7 (249-288)||(28317626-28317665)
chr7 (250-288)||(39770208-39770246)
chr7 (233-286)||(43201467-43201520)
chr7 (249-288)||(47158957-47158996)
chr7 (166-228)||(28317432-28317494)
chr7 (250-288)||(38352097-38352135)
chr7 (175-220)||(42882255-42882300)
[»] scaffold1905 (2 HSPs)
scaffold1905 (133-235)||(572-671)
scaffold1905 (233-288)||(408-463)
[»] chr6 (6 HSPs)
chr6 (133-228)||(10886890-10886982)
chr6 (232-288)||(10886720-10886776)
chr6 (204-288)||(26653656-26653740)
chr6 (204-288)||(26759624-26759708)
chr6 (250-288)||(24348966-24349004)
chr6 (233-288)||(34242885-34242940)
[»] scaffold0021 (1 HSPs)
scaffold0021 (250-288)||(109773-109811)
[»] scaffold0004 (1 HSPs)
scaffold0004 (246-288)||(106319-106361)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 44280801 - 44280596
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttgg 182  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  44280801 agaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggggagggtgttgaaatgggaaaaaagtgagttgg 44280702  T
Q  183 aggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44280701 aggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataa 44280602  T
Q  283 tttgga 288  Q
    ||||||    
T  44280601 tttgga 44280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 77 - 288
Target Start/End: Complemental strand, 36527515 - 36527303
Alignment:
Q  77 tttcttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  36527515 tttcttagaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggtggggggtgttgaaatgggaaaaaagt 36527416  T
Q  176 gagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||||||||||||||||||||||||||    
T  36527415 gagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattggctgctcggatttttatcttc 36527316  T
Q  276 ttaataatttgga 288  Q
    |||||||||||||    
T  36527315 ttaataatttgga 36527303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 14383667 - 14383462
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgagttg 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  14383667 agaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggtggggggtgttgaaatgggaaaaa-gtgagttg 14383569  T
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |   |||||||||||||||||||||||||||||||||    
T  14383568 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgaagacacttggcgcgcgctgattggctgctcggatttttatcttcttaata 14383469  T
Q  282 atttgga 288  Q
    |||||||    
T  14383468 atttgga 14383462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 43022228 - 43022172
Alignment:
Q  232 agacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||| ||||||  | |||||||||||| |||||||||||||||||||||||||||    
T  43022228 agacacatgacattatgtgattggctgcttggatttttatcttcttaataatttgga 43022172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 17928747 - 17928786
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  17928747 tgattggctgcttggatttttatcttcttaataatttgga 17928786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 22349444 - 22349483
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  22349444 tgattggctgcttggatttttatcttcttaataatttgga 22349483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 39490652 - 39490613
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  39490652 tgattggctgcttgaatttttatcttcttaataatttgga 39490613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 5144920 - 5144958
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  5144920 gattggctgcttcgatttttatcttcttaataatttgga 5144958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 22349253 - 22349307
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgc 220  Q
    |||||||  |||||||||||||||||||| ||||| | |||||| ||||||||||    
T  22349253 ggaaaaatctgagttggaggagggaagtgatgaaagagttcaacttgttgaatgc 22349307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 17486319 - 17486282
Alignment:
Q  251 attggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||| | |||||||||||||||||||||||||    
T  17486319 attggctgcttgaatttttatcttcttaataatttgga 17486282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 81 - 288
Target Start/End: Complemental strand, 4046813 - 4046608
Alignment:
Q  81 ttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagtt 180  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  4046813 ttagaccatttacaatggtatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggg--gggtgttgaaatgggaaaaaagtgagtt 4046716  T
Q  181 ggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaat 280  Q
    | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4046715 gaaggagggaagtgttgaaacaattcaacatgttgaatgcatggtccacggagacacttggcatgttttgattggctgctcggatttttatcttcttaat 4046616  T
Q  281 aatttgga 288  Q
    ||||||||    
T  4046615 aatttgga 4046608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 78 - 288
Target Start/End: Original strand, 51998617 - 51998824
Alignment:
Q  78 ttcttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtga 177  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  51998617 ttctaagaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggg---ggtgatgaaatgggaaaaaagtga 51998713  T
Q  178 gttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttctt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||||||||||||||||||| ||||||||    
T  51998714 gttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattggctgctcggattttgatcttctt 51998813  T
Q  278 aataatttgga 288  Q
    |||||||||||    
T  51998814 aataatttgga 51998824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 50734712 - 50734506
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtgg-ggtgttgaaatgggaaaaaagtgagttg 181  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||  || |||||||||||||| |||||||||||||    
T  50734712 agaccatttacaatagcatgttgaatttgccattcaacatgttgaacctttgttgaaccattgtaggtgggaggtgttgaaatggggaaaaagtgagttg 50734613  T
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||  |  |   |||||||||||||||||||||||||||||||||    
T  50734612 gaggagggaagtgttgaaacaattcaacatgttgaatgtctggcccatggagatacttagcgcgcgctgattggctgctcggatttttatcttcttaata 50734513  T
Q  282 atttgga 288  Q
    |||||||    
T  50734512 atttgga 50734506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 50778143 - 50778349
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtgg-ggtgttgaaatgggaaaaaagtgagttg 181  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||  || |||||||||||||| |||||||||||||    
T  50778143 agaccatttacaatagcatgttgaatttgccattcaacatgttgaacctttgttgaaccattgtaggtgggaggtgttgaaatggggaaaaagtgagttg 50778242  T
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||  |  |   |||||||||||||||||||||||||||||||||    
T  50778243 gaggagggaagtgttgaaacaattcaacatgttgaatgtctggcccatggagatacttagcgcgcgctgattggctgctcggatttttatcttcttaata 50778342  T
Q  282 atttgga 288  Q
    |||||||    
T  50778343 atttgga 50778349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 37182522 - 37182658
Alignment:
Q  152 ggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttga 251  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||    
T  37182522 ggggtgttgaaatgggaaaaaagtgagttggaggaggaaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctga 37182621  T
Q  252 ttggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||||||||||||||||||||||||||    
T  37182622 ttggctgctcggatttttatcttcttaataatttgga 37182658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 29702300 - 29702145
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    |||||||||||||||||| | | ||||||| |||||||||  ||||||||||||| || ||||||||  |||||||||||||||| || ||||||||  |    
T  29702300 tgttgaaccattgtagggggagttgttgaattgggaaaaatatgagttggaggagagaggtgttgaacaaattcaacatgttgaaagcatggcccacata 29702201  T
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| |||||||||||||| |||| |||||||||||||||||||||||||||    
T  29702200 gacacttggcatgttttgattggatgcttggatttttatcttcttaataatttgga 29702145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 41183863 - 41183750
Alignment:
Q  175 tgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatctt 274  Q
    ||||||||||||| || ||||||||  |||||||||||||||| |||||| |||| |||||| |||||||||||||||||||| || | |||||||||||    
T  41183863 tgagttggaggagagaggtgttgaataaattcaacatgttgaaagcctggtccacagagacatttgacatgttttgattggctccttgaatttttatctt 41183764  T
Q  275 cttaataatttgga 288  Q
    || |||||||||||    
T  41183763 ctcaataatttgga 41183750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 4873696 - 4873751
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  4873696 gacacttggcatgttttgattggctgcttggatttttatcttcttaataatttgga 4873751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 33187638 - 33187693
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  33187638 gacacttggcatgttttgattggctgcttggatttttatcttcttaataatttgga 33187693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 42564489 - 42564434
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42564489 gacacatggcatgttttgattggctgcttggatttttatcttcttaataatttgga 42564434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 36177982 - 36178066
Alignment:
Q  204 ttcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||| ||||| ||||| | ||||  || | ||||  ||||||||||| |||||||||||||||||||||||||||    
T  36177982 ttcaacatgttgaaagcctgacccacagtgacatgtggcttgttacgattggctgcttggatttttatcttcttaataatttgga 36178066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 51305131 - 51305047
Alignment:
Q  204 ttcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||| |||||| |  | | ||||| |||| ||||  ||||||||||| |||||||||| ||||||||||||||||    
T  51305131 ttcaacatgttgaaagcctggtctgcagtgacacgtgacttgttacgattggctgcttggatttttattttcttaataatttgga 51305047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 6044874 - 6044913
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  6044874 tgattggctgcttggatttttatcttcttaataatttgga 6044913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 6833157 - 6833102
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||| || ||||||  ||||||||||| |||||||||||||||||||||||||||    
T  6833157 gacacgtggcatgttacgattggctgcttggatttttatcttcttaataatttgga 6833102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 10424204 - 10424243
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  10424204 tgattggctgcttggatttttatcttcttaataatttgga 10424243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 32119979 - 32120018
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32119979 tgattggctgcttggatttttatcttcttaataatttgga 32120018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 44084836 - 44084797
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  44084836 tgattggctgcttggatttttatcttcttaataatttgga 44084797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 12975351 - 12975313
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  12975351 gattggctgcttggatttttatcttcttaataatttgga 12975313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 48886378 - 48886416
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  48886378 gattggctgcttggatttttatcttcttaataatttgga 48886416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 51999618 - 51999656
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  51999618 gattggctgcttggatttttatcttcttaataatttgga 51999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 31169823 - 31169860
Alignment:
Q  251 attggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31169823 attggctgcttggatttttatcttcttaataatttgga 31169860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 11908556 - 11908520
Alignment:
Q  252 ttggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||| |||||||||||||||||||||||||||    
T  11908556 ttggctgcttggatttttatcttcttaataatttgga 11908520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 42564667 - 42564605
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggccca 228  Q
    |||||||  |||||||||||||||||||||||||   |||||||  |||||| ||||||||||    
T  42564667 ggaaaaatctgagttggaggagggaagtgttgaatggattcaactagttgaaagcctggccca 42564605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 7008640 - 7008599
Alignment:
Q  247 tttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||| ||||||||||| |||||||| ||||||    
T  7008640 tttgattggctgcttggatttttatcatcttaatattttgga 7008599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10381108 - 10381165
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 223  Q
    |||||||  |||||||||||||||||||| ||||| | ||||||  ||||||||||||    
T  10381108 ggaaaaatctgagttggaggagggaagtgatgaaagagttcaactagttgaatgcctg 10381165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 6044683 - 6044735
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaat 218  Q
    |||||||  |||||||||||||||||||| ||||| | ||||||| |||||||    
T  6044683 ggaaaaatctgagttggaggagggaagtgatgaaagagttcaacaagttgaat 6044735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 33795084 - 33795120
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataattt 285  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  33795084 tgattggctgttcggatttttatcatcttaataattt 33795120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 93 - 288
Target Start/End: Original strand, 23648455 - 23648649
Alignment:
Q  93 caatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaag 192  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23648455 caatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggg-ggggtgttgaaatgggaaaaaagtgagttggaggagggaag 23648553  T
Q  193 tgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  23648554 tgttgaaacaattcaacatgttgaatgtctggcccacggagacacttggcatgttttgattggctgctcgtatttttatcttcttaataatttgga 23648649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 93 - 288
Target Start/End: Complemental strand, 23810117 - 23809923
Alignment:
Q  93 caatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaag 192  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23810117 caatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggg-ggggtgttgaaatgggaaaaaagtgagttggaggagggaag 23810019  T
Q  193 tgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  23810018 tgttgaaacaattcaacatgttgaatgtctggcccacggagacacttggcatgttttgattggctgctcgtatttttatcttcttaataatttgga 23809923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 81 - 288
Target Start/End: Original strand, 13592307 - 13592503
Alignment:
Q  81 ttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagtt 180  Q
    ||||||||||||||||||||||||||||||||||||||| |||||           ||||||||||||||  ||||||||||||||||||||||||||||    
T  13592307 ttagaccatttacaatggcatgttgaatttgccattcaacatgtt-----------gaaccattgtaggggagggtgttgaaatgggaaaaaagtgagtt 13592395  T
Q  181 ggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  13592396 ggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcatgttttgattggctgctcggatttttaacttcttaat 13592495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 7651618 - 7651464
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    |||||||||||||||||| ||| ||||||| |||||||||  ||||||||||||| || ||||||||  |||||||||||||||| || ||||||||  |    
T  7651618 tgttgaaccattgtaggg-gggttgttgaattgggaaaaatatgagttggaggagagaggtgttgaacaaattcaacatgttgaaagcatggcccacata 7651520  T
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  7651519 gacacttgacatgttttgattggatgcttggatttttatcttcttaataatttgga 7651464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 29615765 - 29615904
Alignment:
Q  93 caatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaag 192  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||||||||| || |    
T  29615765 caatggcatgttgaatttgccattcaacatgttaaacccttgttgaaccgttgtaggg--gggtgttgaaatgggaaaaaactgagttggaggagagagg 29615862  T
Q  193 tgttgaaacaattcaacatgttgaatgcctggcccacggaga 234  Q
    |||| || ||||||||||||||||| ||||||||||| ||||    
T  29615863 tgttcaatcaattcaacatgttgaaagcctggcccacagaga 29615904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 31007830 - 31007983
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    ||||||||||||||||||  || ||||||| |||||||||  ||||||||||||| || ||||||||  |||||||||||||||| || ||||||||  |    
T  31007830 tgttgaaccattgtaggg--ggttgttgaattgggaaaaatatgagttggaggagagaggtgttgaactaattcaacatgttgaaagcatggcccacata 31007927  T
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||    
T  31007928 gacacttggcatgttttgattggatgcttggatttttatctttttaataatttgga 31007983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 29616013 - 29616069
Alignment:
Q  232 agacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29616013 agacacatgacatgttttgattggctgcttggatttttatcttcttaataatttgga 29616069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 39239138 - 39239032
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| ||||||||| | | ||||| || | |||| |||||||||||| |||||||||| |||||||||    
T  39239138 gaggagagaggtgttgaaaaggttcaacatgttgaaagcctggcccgcagtgacacgtggcttgttatgattggctgcttggatttttattttcttaata 39239039  T
Q  282 atttgga 288  Q
    |||||||    
T  39239038 atttgga 39239032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 42804323 - 42804378
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| |||||||||||||||| || | |||||||||||||||||||||||||    
T  42804323 gacacttggcatgttttgattggctacttgaatttttatcttcttaataatttgga 42804378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 19241837 - 19241798
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  19241837 tgattggctgcttggatttttatcttcttaataatttgga 19241798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 3455346 - 3455308
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  3455346 gattggctgcttggatttttatcttcttaataatttgga 3455308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 13479069 - 13479175
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| | ||||||| | | ||||| || | ||||  ||||||||||| | |||||||| |||||||||    
T  13479069 gaggagagaggtgttgaaaaggttcaacatgttgaaagtctggcccgcagtgacacgtggcttgttacgattggctgcttgaatttttattttcttaata 13479168  T
Q  282 atttgga 288  Q
    |||||||    
T  13479169 atttgga 13479175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 25670361 - 25670399
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  25670361 gattggctgcttggatttttatcttcttaataatttgga 25670399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 39009032 - 39008993
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  39009032 tgattggctacttggatttttatcttcttaataatttgga 39008993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 32363006 - 32363044
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| || |||||||||||||||||||||||||||    
T  32363006 gattggctacttggatttttatcttcttaataatttgga 32363044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 42804114 - 42804205
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcc 226  Q
    ||||||| ||||||||||  || ||||||| |||||||||  ||||||||||||| || ||||||||  ||| ||| |||||||| | ||||||    
T  42804114 tgttgaatcattgtaggg--ggttgttgaattgggaaaaatctgagttggaggagagaggtgttgaacaaatacaatatgttgaaagtctggcc 42804205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 23090057 - 23090021
Alignment:
Q  252 ttggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  23090057 ttggctgcttggagttttatcttcttaataatttgga 23090021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 81 - 288
Target Start/End: Original strand, 51493846 - 51494054
Alignment:
Q  81 ttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgagt 179  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  51493846 ttagaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggtggggggtgttgaaatggggaaaaagtgagt 51493945  T
Q  180 tggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||  |||||| ||||||||||||||||||||||||    
T  51493946 tggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgtgctgattgactgctcggatttttatcttcttaa 51494045  T
Q  280 taatttgga 288  Q
    |||||||||    
T  51494046 taatttgga 51494054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 80 - 288
Target Start/End: Original strand, 45622903 - 45623112
Alignment:
Q  80 cttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgag 178  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||    
T  45622903 cttagaccatttacaatggcatgttaaatttgccattcaagatgttgaacccttgttgaaccattgtaggtggggggtgttgaaatggggaaaaagtgag 45623002  T
Q  179 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttctta 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   ||||||||||||||||||||||||||||||    
T  45623003 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattggctgctcggatttttatcttctta 45623102  T
Q  279 ataatttgga 288  Q
    ||||||||||    
T  45623103 ataatttgga 45623112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 29920057 - 29919851
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgagttg 181  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  29920057 agaccatttacaatggcatgttgaatttgccattcaacatgttgaaccattgttgaaccattgtaggtggggggtgttgaaatgggaaaaaagtgagttg 29919958  T
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   ||||||||| |||||||||||||||||||||||    
T  29919957 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattggctactcggatttttatcttcttaata 29919858  T
Q  282 atttgga 288  Q
    |||||||    
T  29919857 atttgga 29919851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 37690673 - 37690879
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgagttg 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||    
T  37690673 agaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaatcattgtaggtggggggtgttgaaatggggaaaaagtgagttg 37690772  T
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||||| ||||||||||||||||||||||||||    
T  37690773 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattgactgctcggatttttatcttcttaata 37690872  T
Q  282 atttgga 288  Q
    |||||||    
T  37690873 atttgga 37690879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 14097382 - 14097178
Alignment:
Q  83 agaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttgg 182  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||    
T  14097382 agaccatttacaatggtatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggtgggggtgttgaa-tggggaaaaagtgagttgg 14097284  T
Q  183 aggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |  |   ||||||| ||||||||||||||||||||||||||    
T  14097283 aggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacagagacacttggcgcgcgctgattggttgctcggatttttatcttcttaataa 14097184  T
Q  283 tttgga 288  Q
    ||||||    
T  14097183 tttgga 14097178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 47297125 - 47297180
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47297125 gacacttggcatgttttgattggctgcttggatttttatcttcttaataatttgga 47297180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 17675848 - 17675903
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  17675848 gacacttggcatgttttgattggctgcttgaatttttatcttcttaataatttgga 17675903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 30878163 - 30878218
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||||  ||||||||||| || ||||||||||||||||||||||||    
T  30878163 gacacttgacatgttacgattggctgcttgggtttttatcttcttaataatttgga 30878218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 31159951 - 31159912
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  31159951 tgattggctgcttggatttttatcttcttaataatttgga 31159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 48384720 - 48384759
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  48384720 tgattggctgcttggatttttatcttcttaataatttgga 48384759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 31160137 - 31160076
Alignment:
Q  175 tgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagaca 236  Q
    |||||||||||||||||||||||||   |||||||| |||||| |  |||||||||||||||    
T  31160137 tgagttggaggagggaagtgttgaatggattcaacaagttgaaaggatggcccacggagaca 31160076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 29524423 - 29524385
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  29524423 gattggctggttggatttttatcttcttaataatttgga 29524385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 45455453 - 45455491
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  45455453 gattggctgcttggatttttttcttcttaataatttgga 45455491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 45364000 - 45363964
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttg 286  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  45364000 gattgactgcttggatttttatcttcttaataatttg 45363964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 48384529 - 48384581
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaat 218  Q
    |||||||  |||||||||||||||||||| ||||| | ||||||| |||||||    
T  48384529 ggaaaaatctgagttggaggagggaagtgatgaaagagttcaacaagttgaat 48384581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 81 - 288
Target Start/End: Original strand, 45100398 - 45100606
Alignment:
Q  81 ttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgagt 179  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||    
T  45100398 ttagaccatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccatcgtaggtggggggtgttgaaatggggaaaaagtgagt 45100497  T
Q  180 tggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||||||||||||||||||||||||||||||    
T  45100498 tggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattggctgctcggatttttatcttcttaa 45100597  T
Q  280 taatttgga 288  Q
    |||||||||    
T  45100598 taatttgga 45100606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 93 - 288
Target Start/End: Complemental strand, 42860596 - 42860407
Alignment:
Q  93 caatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaag 192  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |  |    |||||    |||||||||||||||||||    
T  42860596 caatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggggggggagggg----gggaa----gtgagttggaggagggaag 42860505  T
Q  193 tgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcgga--tttttatcttcttaataatttgga 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||||||||||||| |  ||||||||||||||||||||||||    
T  42860504 tgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgattggctgctcgaatttttttatcttcttaataatttgga 42860407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 15057126 - 15057071
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  15057126 gacacttggcatgttttgattggctgcttggatttttatcttcttaataatttgga 15057071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 15057335 - 15057235
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    ||||||||||||||||||  || ||||||| |||||||||  ||||||||||||| || ||||||||  |||||||||||||||| | ||||||||| ||    
T  15057335 tgttgaaccattgtaggg--ggttgttgaattgggaaaaatctgagttggaggagagatgtgttgaacaaattcaacatgttgaaagtctggcccacaga 15057238  T
Q  233 gac 235  Q
    |||    
T  15057237 gac 15057235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 26245221 - 26245115
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| ||||||||| | | ||||| || | ||||  ||||||||||| |||||||||| |||||||||    
T  26245221 gaggagagaggtgttgaaaaggttcaacatgttgaaagcctggcccgcagtgacacgtggcttgttacgattggctgcttggatttttattttcttaata 26245122  T
Q  282 atttgga 288  Q
    |||||||    
T  26245121 atttgga 26245115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 40284198 - 40284092
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| | ||||||| | | ||||| || | ||||  ||||||||||| |||||||||| |||||||||    
T  40284198 gaggagagaggtgttgaaaaggttcaacatgttgaaagtctggcccgcagtgacacgtggcttgttacgattggctgcttggatttttattttcttaata 40284099  T
Q  282 atttgga 288  Q
    |||||||    
T  40284098 atttgga 40284092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 43524638 - 43524716
Alignment:
Q  156 tgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagac 235  Q
    |||||||||||||||||| ||||||||||||| || ||||||||  | ||||||||||| || | ||||||||| |||||    
T  43524638 tgttgaaatgggaaaaaactgagttggaggagagaggtgttgaacaagttcaacatgtttaaag-ctggcccacagagac 43524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 44150409 - 44150370
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  44150409 tgattggctgcttggatttttatcttcttaataatttgga 44150370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 44503791 - 44503753
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  44503791 gattggctgcttggatttttatcttcttaataatttgga 44503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 13783737 - 13783776
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  13783737 tgattggctggttggatttttatcttcttaataatttgga 13783776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 29732209 - 29732170
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  29732209 tgattggctgtttggatttttatcttcttaataatttgga 29732170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 43524609 - 43524644
Alignment:
Q  93 caatggcatgttgaatttgccattcaaaatgttgaa 128  Q
    ||||||||||||||||||||||||||| ||||||||    
T  43524609 caatggcatgttgaatttgccattcaacatgttgaa 43524644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 13947959 - 13947921
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| || |||||||||||||||||||||||||||    
T  13947959 gattggctacttggatttttatcttcttaataatttgga 13947921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 31129003 - 31129041
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  31129003 gattggctgcttggatttttatcatcttaataatttgga 31129041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 79 - 288
Target Start/End: Complemental strand, 52773584 - 52773376
Alignment:
Q  79 tcttagaccatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgag 178  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||| || |||||||| |||||||||||    
T  52773584 tcttagatcatttacaatggcatgttgaatttgccattcaacatgttgaacccttcttgaactattgtaggg-gggttgctgaaatggaaaaaaagtgag 52773486  T
Q  179 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttctta 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  52773485 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacatagacacttggcatgttttgattggctgctcgaatttttatcttctta 52773386  T
Q  279 ataatttgga 288  Q
    ||||||||||    
T  52773385 ataatttgga 52773376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 85 - 288
Target Start/End: Original strand, 55549436 - 55549640
Alignment:
Q  85 accatttacaatggcatgttgaatttgccattcaaaatgttgaacccttgttgaaccattgtagg-gtggggtgttgaaatgggaaaaaagtgagttgga 183  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  55549436 accatttacaatggcatgttgaatttgccattcaacatgttgaacccttgttgaaccattgtaggtggggggtgttgaaatggggaaaaagtgagttgga 55549535  T
Q  184 ggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataat 283  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | ||  ||||||| ||||||| ||||||||||||||||||||    
T  55549536 ggagggaattgttgaaacaattcaacatgttgaatgtctggcccacggagacacttggcgtgcgttgattgactgctcgaatttttatcttcttaataat 55549635  T
Q  284 ttgga 288  Q
    |||||    
T  55549636 ttgga 55549640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 139 - 286
Target Start/End: Complemental strand, 16021478 - 16021333
Alignment:
Q  139 accattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacact 238  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16021478 accattgtaggg--gggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacagagacact 16021381  T
Q  239 tgacatgttttgattggctgctcggatttttatcttcttaataatttg 286  Q
    || |  |   |||||| ||||| ||||||||||||| |||||||||||    
T  16021380 tggcgcgcgctgattgactgcttggatttttatctttttaataatttg 16021333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 38174180 - 38174026
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    |||||||||||||||||||||  ||||||| |||||||||  ||||||||||||| || ||||||||  |||||||||||||||| || |||||||| ||    
T  38174180 tgttgaaccattgtagggtggt-tgttgaattgggaaaaatatgagttggaggagagaggtgttgaacaaattcaacatgttgaaagcttggcccacaga 38174082  T
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  38174081 gacacctgacatgttttgattgactgcttggatttttatcttcttaataatttgga 38174026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 52018284 - 52018133
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    ||||||||||||||||||  || ||||||| |||||||||  ||||||||||||| || ||||||||  |||||||||||||||| |||||||||||  |    
T  52018284 tgttgaaccattgtaggg--ggttgttgaattgggaaaaatatgagttggaggagagaggtgttgaacaaattcaacatgttgaaagcctggcccac--a 52018189  T
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||    
T  52018188 gacacttggcatgttttgattggctgcttgaatttttatcttctcaataatttgga 52018133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4445044 - 4445120
Alignment:
Q  1 tgatttttctgtcttgttcatttgtgtggacttgttgaaatggaaatggagagagtattatgttttatatggagacttt 79  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||| ||||||||||||||    
T  4445044 tgatttttctgtgttgttcatttgtgtggactcgttgaaatggaaatg--gagagtattatgttatatatggagacttt 4445120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 13114182 - 13114102
Alignment:
Q  152 ggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagac 235  Q
    ||||||||||||||||||||||    |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  13114182 ggggtgttgaaatgggaaaaaac---gttggaggagagaagtgttgaatcaattcaacatgttgaaagcctggcccacagagac 13114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 33077397 - 33077452
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  33077397 gacacttggcatgttttgattggctgcttggatttttatcttcttaataatttgga 33077452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 27864501 - 27864395
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| ||||||||| | | ||||| |||| ||||  ||||||||||| | |||||||| |||||||||    
T  27864501 gaggagagaggtgttgaaaaggttcaacatgttgaaagcctggcccgcagtgacacatgacttgttacgattggctgcttgaatttttattttcttaata 27864402  T
Q  282 atttgga 288  Q
    |||||||    
T  27864401 atttgga 27864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 19273506 - 19273400
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| ||||||||| | | ||||| ||   ||||  ||||||||||| |||||||||| |||||||||    
T  19273506 gaggagagaggtgttgaaaaggttcaacatgttgaaagcctggcccgcagtgacacgtggtttgttacgattggctgcttggatttttattttcttaata 19273407  T
Q  282 atttgga 288  Q
    |||||||    
T  19273406 atttgga 19273400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 35809984 - 35809878
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| ||||||||  | | ||||| || | ||||  ||||||||||| |||||||||| |||||||||    
T  35809984 gaggagagaggtgttgaaaaggttcaacatgttgaaagcctggcctgcagtgacacgtggcttgttacgattggctgcttggatttttattttcttaata 35809885  T
Q  282 atttgga 288  Q
    |||||||    
T  35809884 atttgga 35809878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 33077208 - 33077296
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctgg 224  Q
    ||||||| ||||||||||   ||||||||||| |||||||| ||||||||||||| || ||||||||  | || |||||||| |||||||||    
T  33077208 tgttgaatcattgtaggg---ggtgttgaaataggaaaaaactgagttggaggagagatgtgttgaacaagtttaacatgtttaatgcctgg 33077296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 3529802 - 3529841
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  3529802 tgattggctgcttggatttttatcttcttaataatttgga 3529841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 8995283 - 8995244
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  8995283 tgattggctgcttggatttttatcttcttaataatttgga 8995244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 18468907 - 18468946
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  18468907 tgattggctgcttggatttttatcttcttaataatttgga 18468946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 34198800 - 34198839
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  34198800 tgattggctgcttggatttttatcttcttaataatttgga 34198839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 40721534 - 40721495
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  40721534 tgattggctgcttggatttttatcttcttaataatttgga 40721495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 33609480 - 33609442
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  33609480 gattggctgcttggatttttatcttcttaataatttgga 33609442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 48403456 - 48403494
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  48403456 gattggctgcttggatttttatcttcttaataatttgga 48403494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 34198607 - 34198664
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 223  Q
    |||||||  |||||||||||||||||||||||||  ||||||||  ||||||||||||    
T  34198607 ggaaaaatctgagttggaggagggaagtgttgaatgaattcaactagttgaatgcctg 34198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 40721727 - 40721670
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 223  Q
    |||||||  |||||||||||||||||||||||||  ||||||||  ||||||||||||    
T  40721727 ggaaaaatctgagttggaggagggaagtgttgaatgaattcaactagttgaatgcctg 40721670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 34462883 - 34462967
Alignment:
Q  152 ggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagaca 236  Q
    |||||||||||   |||||||  |||||||||||||||||||||||||   |||||||  |||||| |  |||||||||||||||    
T  34462883 ggggtgttgaatgtggaaaaatctgagttggaggagggaagtgttgaatggattcaactagttgaaagggtggcccacggagaca 34462967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 13093649 - 13093755
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| |  |||||| | | ||||| || | ||||  ||||||||| | |||||||||| |||||||||    
T  13093649 gaggagagaggtgttgaaaaggttcaacatgttgaaagtatggcccgcagtgacacgtggcttgttacgattggctgtttggatttttattttcttaata 13093748  T
Q  282 atttgga 288  Q
    |||||||    
T  13093749 atttgga 13093755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 13114065 - 13114023
Alignment:
Q  232 agacacttgacatgttttgattggctgctcggatttttatctt 274  Q
    |||||| || ||||||||||||||||||| |||||||||||||    
T  13114065 agacacatggcatgttttgattggctgcttggatttttatctt 13114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 33523902 - 33523864
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  33523902 gattggctgtttggatttttatcttcttaataatttgga 33523864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 53347244 - 53347282
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  53347244 gattggctgcttgaatttttatcttcttaataatttgga 53347282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 8995474 - 8995422
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaat 218  Q
    |||||||  |||||||||||||||||||| ||||| | ||||||| |||||||    
T  8995474 ggaaaaatctgagttggaggagggaagtgatgaaagagttcaacaagttgaat 8995422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 30720743 - 30720605
Alignment:
Q  152 ggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttga 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||    
T  30720743 ggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctga 30720644  T
Q  252 ttggctgctcgga--tttttatcttcttaataatttgga 288  Q
    ||||||||||| |  ||||||||||||||||||||||||    
T  30720643 ttggctgctcgaatttttttatcttcttaataatttgga 30720605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 33508139 - 33508194
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  33508139 gacacttgacatgttttgattggctgcttggatttttattttcttaataatttgga 33508194  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 40300004 - 40300104
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||| || ||||||||  | ||||||||||| || |||||||| || ||    
T  40300004 tgttgaaccattgtaggg--gggtgttgaaatgggaaaaaactgagttggatgagagaggtgttgaataagttcaacatgtttaaagcctggcctacaga 40300101  T
Q  233 gac 235  Q
    |||    
T  40300102 gac 40300104  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 40300168 - 40300220
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataattt 285  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  40300168 gacacttgacatgttttgattgactgcttagatttttatcttcttaataattt 40300220  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 45548870 - 45548976
Alignment:
Q  182 gaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaata 281  Q
    |||||| || |||||||||   |||||||||||||| ||||||||| |   ||||| || | ||||  ||||||||||| |||||||||| |||||||||    
T  45548870 gaggagagaggtgttgaaaaggttcaacatgttgaaagcctggcccgcattgacacgtggcttgttacgattggctgcttggatttttattttcttaata 45548969  T
Q  282 atttgga 288  Q
    |||||||    
T  45548970 atttgga 45548976  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 22660613 - 22660514
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    |||||||||||| |||||   ||||||||| |||||||||| ||||||| |||||  | ||||||||  |||||||||||||||| |  |||||||| ||    
T  22660613 tgttgaaccattataggg---ggtgttgaattgggaaaaaactgagttgaaggagataggtgttgaacaaattcaacatgttgaaagtttggcccacaga 22660517  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 42882135 - 42882079
Alignment:
Q  232 agacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||| ||||||  | |||||||||||| |||||||||||||||||||||||||||    
T  42882135 agacacatgacattatgtgattggctgcttggatttttatcttcttaataatttgga 42882079  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 22660405 - 22660351
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| |||||||||||||  |||| |||||||||||||||||||||||||||    
T  22660405 gacacttggcatgttttgattga-tgcttggatttttatcttcttaataatttgga 22660351  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 28317626 - 28317665
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  28317626 tgattggctgcttggatttttatcttcttaataatttgga 28317665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 39770246 - 39770208
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  39770246 gattggctgcttggatttttatcttcttaataatttgga 39770208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 43201467 - 43201520
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttg 286  Q
    |||||||||||  ||||||||||||||| |||||||| || |||||||||||||    
T  43201467 gacacttgacagattttgattggctgcttggatttttctcatcttaataatttg 43201520  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 47158957 - 47158996
Alignment:
Q  249 tgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  47158957 tgattggctgcttggatttttattttcttaataatttgga 47158996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 28317432 - 28317494
Alignment:
Q  166 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggccca 228  Q
    |||||||  |||||||||||||||||||||||||   |||||||  |||||| ||||||||||    
T  28317432 ggaaaaatctgagttggaggagggaagtgttgaattgattcaactagttgaaagcctggccca 28317494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 38352135 - 38352097
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  38352135 gattggctgcttgaatttttatcttcttaataatttgga 38352097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 42882300 - 42882255
Alignment:
Q  175 tgagttggaggagggaagtgttgaaacaattcaacatgttgaatgc 220  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||||    
T  42882300 tgagttggaggagggaagtgatgaaagagttcaacttgttgaatgc 42882255  T

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Target: scaffold1905 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 671 - 572
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacgga 232  Q
    ||||||||||||||||||   |||||||||||||||||||| ||||||||||||| || ||||||||  | |||||||||||||| ||||||||||| ||    
T  671 tgttgaaccattgtaggg---ggtgttgaaatgggaaaaaactgagttggaggagagaggtgttgaacaagttcaacatgttgaaagcctggcccacaga 575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 463 - 408
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||||| |||||||    
T  463 gacacttggcatgttttgattggctgcttgaatttttatcttcttaattatttgga 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 10886982 - 10886890
Alignment:
Q  133 tgttgaaccattgtagggtggggtgttgaaatgggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggccca 228  Q
    ||||||||||||||||||   ||||||||| | |||||||  |||||||||||||||||||||||||  ||||||||  |||||| ||||||||||    
T  10886982 tgttgaaccattgtaggg---ggtgttgaatttggaaaaatctgagttggaggagggaagtgttgaatgaattcaactagttgaaagcctggccca 10886890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 10886776 - 10886720
Alignment:
Q  232 agacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10886776 agacacatggcatgttttgattggctgcttggattgttatcttcttaataatttgga 10886720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 26653656 - 26653740
Alignment:
Q  204 ttcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||| ||||||||| | | ||||| || | ||||  ||||||||||| |||||||||| ||||||||||||||||    
T  26653656 ttcaacatgttgaaagcctggcccgcagtgacacgtggcttgttacgattggctgcttggatttttattttcttaataatttgga 26653740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 26759624 - 26759708
Alignment:
Q  204 ttcaacatgttgaatgcctggcccacggagacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||| ||||||||| | | ||||| || | ||||  ||||||||||| |||||||||| ||||||||||||||||    
T  26759624 ttcaacatgttgaaagcctggcccgcagtgacacgtggcttgttacgattggctgcttggatttttattttcttaataatttgga 26759708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 24349004 - 24348966
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  24349004 gattggctgcttggatttttatcttcttaataatttgga 24348966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 34242940 - 34242885
Alignment:
Q  233 gacacttgacatgttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||| || ||||||  ||||| ||||| |||||||||||||||||||||||||||    
T  34242940 gacacgtggcatgttacgattgactgcttggatttttatcttcttaataatttgga 34242885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 109773 - 109811
Alignment:
Q  250 gattggctgctcggatttttatcttcttaataatttgga 288  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  109773 gattggctgcttggatttttatcttcttaataatttgga 109811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 106361 - 106319
Alignment:
Q  246 ttttgattggctgctcggatttttatcttcttaataatttgga 288  Q
    |||||||||||||   |||||||||||||||||||||||||||    
T  106361 ttttgattggctggctggatttttatcttcttaataatttgga 106319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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